DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema4f

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_062145.1 Gene:Sema4f / 29745 RGDID:3658 Length:776 Species:Rattus norvegicus


Alignment Length:535 Identity:165/535 - (30%)
Similarity:255/535 - (47%) Gaps:66/535 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 HYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDILNCVSKGKREKVECRN 185
            :|....:|..::.|||||.|.||.|.|....:.....|.::.|   :...||..|||:|. ||.|
  Rat    69 NYSALLVDPASHTLYVGARDSIFALTLPFSGERPRRIDWMVPE---THRQNCRKKGKKED-ECHN 129

  Fly   186 HIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVY 250
            .|:::..:  |...|..|||.|.:||..||:.:     ..|.|..:..|.||||::||..|.||.
  Rat   130 FIQILAIV--NASHLLTCGTFAFDPKCGVIDVS-----SFQQVERLESGRGKCPFEPAQRSAAVM 187

  Fly   251 VENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFE 315
            ...       .||..|...|...:.:|.|:      .||.| ::.||... |..|:.|.||.:..
  Rat   188 AGG-------VLYTATVKNFLGTEPIISRA------VGRAE-DWIRTETL-SSWLNAPAFVAAMV 237

  Fly   316 IG----------EFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNC 370
            :.          :.::|||.|.:....:..:....||||||..|.||:..:.|.|.|:|||.:.|
  Rat   238 LSPAEWGDEDGDDEIFFFFTETSRVLDSYERIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLC 302

  Fly   371 SISSEFPFYFNEIQSVYKM---PTDDTK-FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQ 431
            . ..|.......:|::.::   |...|. ||..|::...|...||||::..:||.|..:|.|:|.
  Rat   303 P-GPEHGRASGVLQAMAELRPQPGAGTPIFYGIFSSQWEGAAISAVCAFRPQDIRAVLNGPFREL 366

  Fly   432 ATSNSAWLPVLNSKVPEPRPGTC---------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPV 487
            ....:..|||::::||:||||.|         ...:.:|||.||.|||.|||||:.|....|.|:
  Rat   367 KHDCNRGLPVMDNEVPQPRPGECIANNMKLQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGRPL 431

  Fly   488 FFKRDVILTKLVVDKIRIDKLN-QEFLVYFVATTSGHIYKIVQFMHYGQRHSNLVDIFEASPHSE 551
            ....|....::|..  |:..|: :|:.|.::.|..||:::.|:.   |.:.|.|.|: ...|..:
  Rat   432 LVTTDTAYLRVVAH--RVTSLSGKEYDVLYLGTEDGHLHRAVRI---GAQLSVLEDL-ALFPEPQ 490

  Fly   552 PIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDPYCGWDKDVNACRPY---QL 611
            |:..|.|.|..  |.|.:..:|.|::.:.|. |..||..|:  .||.|.|...::||..:   ..
  Rat   491 PVESMKLYHDW--LLVGSHTEVTQVNTSNCG-RLQSCSECILAQDPVCAWSFRLDACVAHAGEHR 552

  Fly   612 GLLQDVAN-ETSGIC 625
            |::||:.: :.|.:|
  Rat   553 GMVQDIESADVSSLC 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 149/481 (31%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250
Ig strand B 642..646 CDD:409353
Ig strand C 658..662 CDD:409353
Ig strand E 686..690 CDD:409353
Ig strand F 700..705 CDD:409353
Ig strand G 717..720 CDD:409353
Sema4fNP_062145.1 Sema_4F 57..516 CDD:200522 149/481 (31%)
PSI 517..568 CDD:396154 16/52 (31%)
Sema4F_C 581..776 CDD:437260
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 702..741
PDZ-binding. /evidence=ECO:0000250|UniProtKB:Q9Z123 774..776
Blue background indicates that the domain is not in the aligned region.

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