DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema3e

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001100049.1 Gene:Sema3e / 296789 RGDID:1310973 Length:775 Species:Rattus norvegicus


Alignment Length:788 Identity:226/788 - (28%)
Similarity:340/788 - (43%) Gaps:164/788 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 PCCTGSSAAHHLR-HHKEHVQ---------DFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLR 148
            |..|.:.:...|| .|||.::         .|....||  |..:||....|:||..|.::.|||.
  Rat    22 PGYTANPSYPRLRLSHKELLELNRTSIFQSPFGFLDLH--TMLLDEYQERLFVGGRDLVYSLNLE 84

  Fly   149 NISQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDY 213
            .:|....|   :....|...:..|:.||| :..||.|::||:.  ::|...|..|.|.|.:|...
  Rat    85 RVSDGYRE---IYWPSTAVKVEECIMKGK-DANECANYVRVLH--HYNRTHLLTCATGAFDPHCA 143

  Fly   214 VINAN------LTHLP--RSQYVPGIGLGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEF 270
            .|...      |.||.  ||:      .|.|:||:||  ||:.|....||     .|:||..:::
  Rat   144 FIRVGHHSEDPLFHLESHRSE------RGRGRCPFDP--NSSFVSTLVGN-----ELFAGLYSDY 195

  Fly   271 TKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFEIGE-------FVYFFFREHA 328
            ...||.|||| |..|.:.|.|.:       |.:||.:|.||||:.|.:       .:||||.|.|
  Rat   196 WGRDSAIFRS-LGKLGHIRTEHD-------DERLLKEPKFVGSYMIPDNEDPEDNKMYFFFTEKA 252

  Fly   329 VEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCSI--SSEFPFYFNEIQSVYKMPT 391
            :|..|....:|:||.|:|.||.||:.::...|:|:||||:.||:  .:....:|:|::.|:.:||
  Rat   253 LEAENNAHTIYTRVGRLCVNDMGGQRILVNKWSTFLKARLVCSVPGMNGIDTHFDELEDVFLLPT 317

  Fly   392 DDTK---FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGT 453
            .|.|   .:..|.|.:|...|.|||.|.:..|..||:|.:..:......| .:...|||.||||:
  Rat   318 RDPKNPVIFGLFNTTSNIFRGHAVCVYHMSSIREAFNGPYAHKEGPEYHW-SLYEGKVPYPRPGS 381

  Fly   454 C--------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRD--VILTKLVVDKIRIDKL 508
            |        :..|...||..:.|.|.||||.:.:......|:..|.|  ..|.:|.||  |::..
  Rat   382 CASKVNGGKYGSTKDYPDDAIRFARMHPLMYQPIKPVHKKPILVKTDGKYNLRQLAVD--RVEAE 444

  Fly   509 NQEFLVYFVATTSGHIYKIVQFMHYGQR----HSNLVDIFEASPHSEPIREMTLSHKTGSLYVAT 569
            :.::.|.|:.|.:|.:.|::..  |.|.    ...:::..:......||..|.:|.|...||:.:
  Rat   445 DGQYDVLFIGTDTGIVLKVITI--YNQETEWMEEVILEELQIFKDPAPIISMEISSKRQQLYIGS 507

  Fly   570 DHQVKQIDIAMCARRYDSCFRC--VSDPYCGWDKDVNACRPYQLGL-------LQDV-----ANE 620
            ...|.|:....|.....:|..|  ..||||.|| .::..|.|..|.       .|||     |.:
  Rat   508 ASAVAQVRFHHCDMYGSACADCCLARDPYCAWD-GISCSRYYPTGAHSKRRFRRQDVRHGNAAQQ 571

  Fly   621 TSG--ICDTSVLRKKVTSSYG----QTLHLSCFVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTK 679
            ..|  ....::.|.:...:||    .|| |.|   .|..|:.|.. |:   .:||| :||....|
  Rat   572 CFGQQFVGDALDRTEERLAYGIESNSTL-LEC---TPRSLQAKVV-WF---VQKGR-DVRKEEVK 627

  Fly   680 YID---TNEGGLVLLAVNEGDGGRYDSYLDGTLLCSYGVT--------VDAHR------------ 721
            ..|   ..:.||:.|.|.:.|.|   :|...|:..|:..|        |:.|:            
  Rat   628 TDDRVVKMDLGLLFLRVRKSDAG---TYFCQTVEHSFVHTVRKITLEVVEEHKVEGMFHKDREEE 689

  Fly   722 ------CSP---------PSQKQDYQKI-YSH-----------WCNE--FEKYKSAMKQWQ-AKQ 756
                  |.|         |..|:..|.| ||:           ||.:  .:|.|.:..:|: |..
  Rat   690 KHHKMPCPPLTGMSQGTKPWYKEFLQLIGYSNFQRVEEYCEKVWCTDKKRKKLKMSPSKWKYANP 754

  Fly   757 EQCGLKDK 764
            ::..|:.|
  Rat   755 QEKRLRSK 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 155/492 (32%)
Ig 632..720 CDD:299845 28/102 (27%)
Sema3eNP_001100049.1 Sema_3E 49..519 CDD:200514 156/503 (31%)
PSI 518..566 CDD:214655 15/48 (31%)
Ig_Semaphorin_classIII 585..675 CDD:143279 28/101 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.910

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