DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema4b

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001163933.1 Gene:Sema4b / 293042 RGDID:1307872 Length:821 Species:Rattus norvegicus


Alignment Length:899 Identity:238/899 - (26%)
Similarity:359/899 - (39%) Gaps:221/899 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 GKGKHRLCSLSAL-LLVLVAQTVHVEYARADYENTWNLYYEPPCCTGSSAAHHLRHHKEHVQDFS 116
            |:.......|||| ||:|:.:|.   .|||               .|...:..|...:..::.|.
  Rat     2 GRASRSADLLSALQLLLLLLRTT---TARA---------------LGPRISVPLDSEERLIRKFE 48

  Fly   117 CGPL-HYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTG--SDIL-------- 170
            ...: :|....:.:....|||||.:.:|.|| .|:|          ..|.|  .::|        
  Rat    49 AENISNYTALLLSQDGKTLYVGAREALFALN-SNLS----------FLPGGEYQELLWSADPDRK 102

  Fly   171 -NCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVPGIGL- 233
             .|..|||..|.:|:|:|:::.|:  |...|..|||.|.:|....||.....|.|.:  .|..| 
  Rat   103 QQCSFKGKDPKRDCQNYIKILLPL--NSSHLLTCGTAAFSPLCAYINTASFTLARDE--AGSVLL 163

  Fly   234 --GIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKR 296
              |.|:||:||...|||:.|:.       .||.||.:.|...|..|.||            ...|
  Rat   164 EDGKGRCPFDPNFKSTALVVDG-------ELYTGTVSSFQGNDPAISRS------------QSPR 209

  Fly   297 TVKYDSKL--LDKPNFVGSFEIGEF----------VYFFFREHAVEYINCGKAVYSRVARVCKND 349
            ..|.:|.|  |..|.||.|..:.|.          :||||.|...|:......:.||||||||.|
  Rat   210 PTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGD 274

  Fly   350 RGGKYMISQNWATYLKARMNCSISSE-FPFYFNEIQSVYKM---PTD--DTKFYATFTT--NTNG 406
            .||:.::.|.|.::|||::.||...: ||  ||.:|.|:.:   |.|  .|.||..||:  :...
  Rat   275 EGGERVLQQRWTSFLKAQLLCSRPDDGFP--FNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGT 337

  Fly   407 LIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC---------HNDTATLP 462
            ..|||:|.:.:.|:..||||.:|:.......|....: .||.||||.|         .|.:..||
  Rat   338 TEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETH-PVPTPRPGACITNSARERKINSSLQLP 401

  Fly   463 DSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKI 527
            |.||||::.|.|||..|....   :..:......::.|.  |:..|:..:.|.|:.|..|.::|.
  Rat   402 DRVLNFLKDHFLMDGQVRSRL---LLLQPQARYQRVAVH--RVPGLHSTYDVLFLGTGDGRLHKA 461

  Fly   528 VQFMHYGQRHSNLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCV 592
            |..    ....::::..:..|..:|::.:.|....|.||.::...|.|:.:|.|: .|.:|..|:
  Rat   462 VTL----DSRVHIIEELQVFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCS-LYPTCGDCL 521

  Fly   593 --SDPYCGWD-----------KDVNACRPYQLGLLQDV--ANETSGICDTSVLR----------K 632
              .||||.|:           .|: |.||:    :||:  || |..:|:.|..:          |
  Rat   522 LARDPYCAWNGSTCKLLSLYQPDL-ASRPW----IQDIEGAN-TKELCNISSAKARSFKPGKPCK 580

  Fly   633 KVTSSYGQTLHLSCFVKMPEVLRKKQTR-WYHHSTE-KGRYEVRYTPTKYIDTNEGGLVLLAVNE 695
            :|.........|:|     .:|....|| |.|:... ......|..|:       |.|:|:...:
  Rat   581 QVQIQANTVNTLAC-----PLLSNLATRLWLHNGAPVNASASCRVLPS-------GDLLLVGSQQ 633

  Fly   696 G----------DGGR--YDSYL---------------DGTLLCSYGVTVDAHRCSPPS-QKQDYQ 732
            |          :|.|  ..||.               |||     .|.::..|.|.|: .:..:.
  Rat   634 GLGVFQCWSIEEGFRQLVASYCPEVKEDGVMDQNDQSDGT-----PVIINTSRVSAPAGGRASWG 693

  Fly   733 KIYSHWCNEF-------------------EKYKSAMKQWQAKQEQCGLKDKTGP--ISSNGKHVN 776
            ...|:| |||                   .:.:..||.:..:.|...:..||.|  :....:.:|
  Rat   694 ADKSYW-NEFLVMCTLFGLAVVLLVLFFLYRNRDGMKLFLKQGECASVHPKTRPAVLPPETRPLN 757

  Fly   777 DVFSNDALVXPRKYLYSFEFLSSATEG----VASAHRKLYI---FVFVLTIFAR 823
            .|......: .|.|    :.||.::.|    ..|..|.|.|   ||.|..:..|
  Rat   758 GVGPPSTPLDHRGY----QALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPR 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 150/502 (30%)
Ig 632..720 CDD:299845 23/116 (20%)
Sema4bNP_001163933.1 Sema 46..509 CDD:417757 151/508 (30%)
PSI 510..556 CDD:396154 15/51 (29%)
Ig_Sema4B_like 577..661 CDD:409456 19/95 (20%)
Ig strand B 590..594 CDD:409456 1/3 (33%)
Ig strand C 602..606 CDD:409456 2/3 (67%)
Ig strand E 624..627 CDD:409456 1/2 (50%)
Ig strand F 637..642 CDD:409456 0/4 (0%)
Ig strand G 654..657 CDD:409456 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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