DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema7a

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_035482.1 Gene:Sema7a / 20361 MGIID:1306826 Length:664 Species:Mus musculus


Alignment Length:681 Identity:164/681 - (24%)
Similarity:269/681 - (39%) Gaps:167/681 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 KEHVQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNL---RNISQSICERDVLILEPTGSDIL 170
            ::|| ||| .|..:...:.:..:.:::||...:::..|.   :|.|    .|.|.|....||   
Mouse    61 QDHV-DFS-QPEPHTVLFHEPGSFSVWVGGRGKVYHFNFPEGKNAS----VRTVNIGSTKGS--- 116

  Fly   171 NCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGI 235
             |     ::|.:|.|:|.:::.   .|..|.||||||..|..:       :|.....|..:|...
Mouse   117 -C-----QDKQDCGNYITLLER---RGNGLLVCGTNARKPSCW-------NLVNDSVVMSLGEMK 165

  Fly   236 GKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFK----R 296
            |..|:.|.:||.                            |:|..|....|..::|.|.|    |
Mouse   166 GYAPFSPDENSL----------------------------VLFEGDEVYSTIRKQEYNGKIPRFR 202

  Fly   297 TVKYDSKL------LDKPNFVGSFEI------GEFVYFFFREHAVEYINCGKAVYSRVARVCKND 349
            .::.:|:|      :..|.|:.:..:      .:.:|:||||...:.........||||::|:.|
Mouse   203 RIRGESELYTSDTVMQNPQFIKATIVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGD 267

  Fly   350 RGGKYMIS-QNWATYLKARMNCSISSEFPFYFNEIQSVYKMPTD-----DTKFYATFTTNTNGLI 408
            :||:..:| ..|.|:|||.:.|| .:.....||.:|.|:.:|..     ||:.|..|:...|   
Mouse   268 QGGESSLSVSKWNTFLKAMLVCS-DAATNRNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWN--- 328

  Fly   409 GSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTCHNDTATLPDSVLNFIRKHP 473
            .||||.|.:.||:..|       .||:   |...:..:|.||||.|......:|.........||
Mouse   329 YSAVCVYSLGDIDRVF-------RTSS---LKGYHMGLPNPRPGMCLPKKQPIPTETFQVADSHP 383

  Fly   474 LMDKAVD--HEFGNPVFFKRDVILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQR 536
            .:.:.|:  .....|:|..: ....|:||.:::... .:.|.|.::.|..|.|:|:|:  ...|.
Mouse   384 EVAQRVEPMGPLKTPLFHSK-YHYQKVVVHRMQASN-GETFHVLYLTTDRGTIHKVVE--SGDQD 444

  Fly   537 HSNLVDIFEASP--HSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDPYC 597
            ||.:.:|.|..|  .:..|:.::|......|||.:..:|.|:.:.||......|..|:  .||||
Mouse   445 HSFVFNIMEIQPFHRAAAIQAISLDADRRKLYVTSQWEVSQVPLDMCEVYSGGCHGCLMSRDPYC 509

  Fly   598 GWDKD---------------VNACRPYQLGLLQDVANETSGICDTSVLRKKVTSSYGQTLHLSCF 647
            |||:|               :|...|:     ::..|...   |.:.| :||:.:.....:|:| 
Mouse   510 GWDQDRCVSIYSSQRSVLQSINPAEPH-----RECPNPKP---DEAPL-QKVSLARNSRYYLTC- 564

  Fly   648 VKMPEVLRKKQTRWYH-----HSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLDG 707
               |...|.....|.|     .|.|.|              ::....:|.:......:|..|   
Mouse   565 ---PMESRHATYLWRHEENVEQSCEPG--------------HQSPSCILFIENLTARQYGHY--- 609

  Fly   708 TLLCSYGVTVDAHRCSPPSQKQDYQKIYSHW 738
                         ||.  :|:..|.:...||
Mouse   610 -------------RCE--AQEGSYLREAQHW 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 121/487 (25%)
Ig 632..720 CDD:299845 14/92 (15%)
Sema7aNP_035482.1 Sema_7A 70..489 CDD:200504 121/487 (25%)
Cell attachment site. /evidence=ECO:0000255 265..267 0/1 (0%)
Interaction with integrins. /evidence=ECO:0000250 265..267 0/1 (0%)
PSI 491..>518 CDD:279745 11/26 (42%)
Ig 547..617 CDD:299845 18/106 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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