DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema5a

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_033180.2 Gene:Sema5a / 20356 MGIID:107556 Length:1074 Species:Mus musculus


Alignment Length:798 Identity:237/798 - (29%)
Similarity:337/798 - (42%) Gaps:190/798 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 WNL----YYEPPCCTGSSAAHHLRHHKE---HVQDFSC-GPLHYKTFYMDERNNALYVGAMDRIF 143
            |.|    ..:|..|  ..|.|.:..:||   .:::|.. ..:.:.....|.....|.|||.:.:|
Mouse    17 WRLARPETQDPAKC--QRAEHPVVSYKEIGPWLREFRAENAVDFSRLTFDPGQKELVVGARNYLF 79

  Fly   144 RLNLRNIS--QSI---CERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVC 203
            ||.|.::|  |::   |:      |.|..   .|.|||| .|.||:|:|||:.   ..|.:|:.|
Mouse    80 RLELEDLSLIQAVEWECD------EATKK---ACYSKGK-SKEECQNYIRVLL---VGGDRLFTC 131

  Fly   204 GTNAHNPKDYVIN-ANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTN 267
            ||||..|...:.: :|||.: ..|.     .|:.:|||.|..||||:...:|.      |||.|.
Mouse   132 GTNAFTPVCTIRSLSNLTEI-HDQI-----SGMARCPYSPQHNSTALLTASGE------LYAATA 184

  Fly   268 AEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFEIGEFVYFFFREHAVEYI 332
            .:|...|..|:|| |..|..       .||.:|:||.|::||||.|::||.|.||||||:|||: 
Mouse   185 MDFPGRDPAIYRS-LGTLPP-------LRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH- 240

  Fly   333 NCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCSISSEFPFYFNEIQSVYKMPTDDTKFY 397
            :|||.|:||.|||||||.||::::...|.|::|||:|||...|.|||:||:|..:.:|..|. .|
Mouse   241 DCGKTVFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQGTFFLPELDL-IY 304

  Fly   398 ATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRP----GTCHNDT 458
            ..||||.|.:..||||.:::..|:.||:|.||.|..|.|||||     .|.|.|    ||.....
Mouse   305 GIFTTNVNSIAASAVCVFNLSAISQAFNGPFKYQENSRSAWLP-----YPNPNPNFQCGTMDQGL 364

  Fly   459 -ATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKIRIDKLNQEFLVY--FVATT 520
             ..|.:..|...:|..||.:.|......|.|.:.:...:.|.||.::    .:|.||:  ::||.
Mouse   365 YVNLTERNLQDAQKFILMHEVVQPVTTVPSFMEDNSRFSHLAVDVVQ----GRETLVHIIYLATD 425

  Fly   521 SGHIYKIVQFMHYGQRHSNLVDIFEASP--HSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCAR 583
            .|.|.|:...:.... .|.|::..|..|  .|||||.:.:.|....|:|.....|.:|.:..| .
Mouse   426 YGTIKKVRAPLSQSS-GSCLLEEIELFPERRSEPIRSLQILHSQSVLFVGLQEHVAKIPLKRC-H 488

  Fly   584 RYDSCFRCV--SDPYCGWDKDVNACRPYQLGLLQDVANETSGICDTSVLRKKVTSSYGQTLHLSC 646
            .:.:...|:  .|||||||..:..|...:..|.....:::...|.|..|  .|..|:|.      
Mouse   489 FHQTRSACIGAQDPYCGWDAVMKKCTSLEESLSMTQWDQSIPTCPTRNL--TVDGSFGP------ 545

  Fly   647 FVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGD-------------- 697
                          |           ..:||..:.|....|..|......|              
Mouse   546 --------------W-----------SPWTPCTHTDGTAVGSCLCRSRSCDSPAPQCGGWQCEGP 585

  Fly   698 ----------GG--RYDSYLDGTLLCSYGVTVDAHRCSPPSQK--------QDYQKIYSHWCNEF 742
                      ||  .:.|:...:..|..|..|....||.|:.:        |:.::.|   |||.
Mouse   586 RMEITNCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERY---CNEH 647

  Fly   743 -----EKYKSAMKQWQAKQEQCG---------------------------------LKDKTGP-- 767
                 ..:.:....|:....|||                                 || ||.|  
Mouse   648 LLCPPHVFWTGWGPWERCTAQCGGGIQARRRTCENGPDCAGCNVEYQPCNTNACPELK-KTTPWT 711

  Fly   768 ------ISSNGKHVNDVF 779
                  ||.||.|....|
Mouse   712 PWTPVNISDNGGHYEQRF 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 175/473 (37%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250 17/117 (15%)
Ig strand B 642..646 CDD:409353 0/3 (0%)
Ig strand C 658..662 CDD:409353 0/3 (0%)
Ig strand E 686..690 CDD:409353 1/3 (33%)
Ig strand F 700..705 CDD:409353 1/4 (25%)
Ig strand G 717..720 CDD:409353 1/2 (50%)
Sema5aNP_033180.2 Sema_5A 50..485 CDD:200524 176/479 (37%)
PSI 486..533 CDD:396154 11/47 (23%)
TSP1 544..595 CDD:214559 8/81 (10%)
TSP1 598..651 CDD:214559 12/55 (22%)
TSP1 656..702 CDD:214559 4/45 (9%)
TSP1 787..839 CDD:214559
TSP1 853..896 CDD:214559
TSP1 899..940 CDD:214559
Blue background indicates that the domain is not in the aligned region.

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