DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema4c

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_006495867.1 Gene:Sema4c / 20353 MGIID:109252 Length:943 Species:Mus musculus


Alignment Length:683 Identity:209/683 - (30%)
Similarity:312/683 - (45%) Gaps:103/683 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ENTWNLYYEPPCCTGSSAAHHLRHHKEHVQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLR 148
            |..|||.......:|.......|..:..:|||       .|..:.|.:..|||||.:.:|..:: 
Mouse   131 EMWWNLVPRKTVSSGELVTVVRRFSQTGIQDF-------LTLTLTEHSGLLYVGAREALFAFSV- 187

  Fly   149 NISQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDY 213
               :::..:..:..|......:.|..|||..:.||.|.||.:||  :|...||||||.|..||..
Mouse   188 ---EALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQP--YNSSHLYVCGTYAFQPKCT 247

  Fly   214 VINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIF 278
            .||.....|.|:::..    |.||||||||...|.:.|:.       .||:.|...|...:.||.
Mouse   248 YINMLTFTLDRAEFED----GKGKCPYDPAKGHTGLLVDG-------ELYSATLNNFLGTEPVIL 301

  Fly   279 RSDLYNLTNGRKEANFKRTVK--YDSKLLDKPNFVGSF----EIGEF------VYFFFREHAVEY 331
            |   |..|:        .::|  |.:..|::|:||||.    .:|.|      :||||.|.||||
Mouse   302 R---YMGTH--------HSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEY 355

  Fly   332 INCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCSISSEFPFYFNEIQSVYKM---PTDD 393
            ....:.|.:|||||||.|.||...:.:.|.|:||||:.|| :.::..|||::::|:.:   ...:
Mouse   356 DCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCS-APDWKVYFNQLKAVHTLRGASWHN 419

  Fly   394 TKFYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC---- 454
            |.|:..|......:..||||.|.:..|...|:|.:||.:.....|.. ....||.||||:|    
Mouse   420 TTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWAR-YTDPVPSPRPGSCINNW 483

  Fly   455 HND-----TATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKI-RIDKLNQEFL 513
            |.|     :..|||:.||||:|||||:..|....|.|:..|::...|.:|.|:: .:|  ...:.
Mouse   484 HRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLD--GATYT 546

  Fly   514 VYFVATTSGHIYKIVQ---FMHYGQRHSNLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQ 575
            |.|:.|..|.:.|.|.   ::|..:.    :.:|:    .||:..:.||.....|:..:..|:.|
Mouse   547 VLFIGTGDGWLLKAVSLGPWIHMVEE----LQVFD----QEPVESLVLSQSKKVLFAGSRSQLVQ 603

  Fly   576 IDIAMCARRYDSCFRCV--SDPYCGWDKDVNACRPYQLG-----LLQDVAN-ETSGICDTSVLR- 631
            :.:|.|. :|..|..||  .||||.|:.:.:.|.....|     |:|.||| :||.:|:...:: 
Mouse   604 LSLADCT-KYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKK 667

  Fly   632 -----KKVTSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYI-DTNEGGLVL 690
                 |.:|...|..|.|.|.:..    ......|...|.:....:    |..:: ||....||:
Mouse   668 VRSIPKNITVVSGTDLVLPCHLSS----NLAHAHWTFGSQDLPAEQ----PGSFLYDTGLQALVV 724

  Fly   691 LAVNEGDGGRYDSYLD--GTLLC--SYGVTVDA 719
            :|......|.|..|.:  ||.|.  ||.|.|.|
Mouse   725 MAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVA 757

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 154/486 (32%)
Ig 632..720 CDD:299845 25/93 (27%)
Sema4cXP_006495867.1 Sema_4C 151..607 CDD:200519 158/502 (31%)
PSI 608..>637 CDD:214655 11/29 (38%)
Ig 673..757 CDD:386229 24/91 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.870

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