DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema4b

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001347064.1 Gene:Sema4b / 20352 MGIID:107559 Length:823 Species:Mus musculus


Alignment Length:823 Identity:217/823 - (26%)
Similarity:334/823 - (40%) Gaps:186/823 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 ALLLVLVAQTVHVEYARADYENTWNLYYEPPCCTGSSAAHHLRHHKEHVQDFSCGPL-HYKTFYM 127
            ||||:|:...:.....||               .|...:..|...:..::.|....: :|....:
Mouse    13 ALLLLLLLLLLRTTTTRA---------------LGPRISVPLGSEERLIRKFEAENISNYTALLL 62

  Fly   128 DERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTG--SDIL---------NCVSKGKREKV 181
            .:....|||||.:.:|.|| .|:|          ..|.|  .::|         .|..|||..|.
Mouse    63 SQDGKTLYVGAREALFALN-SNLS----------FLPGGEYQELLWSADADRKQQCSFKGKDPKR 116

  Fly   182 ECRNHIRVIQPMNFNGQKLYVCGTNAHNPK-DYVINANLTHLPRSQYVPG---IGLGIGKCPYDP 242
            :|:|:|:::.|:  |...|..|||.|.:|. .|:..|:.|   .:|...|   :..|.|:||:||
Mouse   117 DCQNYIKILLPL--NSSHLLTCGTAAFSPLCAYIHIASFT---LAQDEAGNVILEDGKGRCPFDP 176

  Fly   243 ADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKL--L 305
            ...|||:.|:.       .||.||.:.|...|..|.||            ...|..|.:|.|  |
Mouse   177 NFKSTALVVDG-------ELYTGTVSSFQGNDPAISRS------------QSSRPTKTESSLNWL 222

  Fly   306 DKPNFVGSFEIGEF----------VYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNW 360
            ..|.||.|..:.|.          :||||.|...|:......:.||||||||.|.||:.::.|.|
Mouse   223 QDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGERVLQQRW 287

  Fly   361 ATYLKARMNCSISSE-FPFYFNEIQSVYKM---PTD--DTKFYATFTT--NTNGLIGSAVCSYDI 417
            .::|||::.||...: ||  ||.:|.|:.:   |.|  .|.||..||:  :.....|||:|.:.:
Mouse   288 TSFLKAQLLCSRPDDGFP--FNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGSAICVFTM 350

  Fly   418 RDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC---------HNDTATLPDSVLNFIRKHP 473
            .|:..||||.:|:.......|....: :||.||||.|         .|.:..|||.||||::.|.
Mouse   351 NDVQKAFDGLYKKVNRETQQWYTETH-QVPTPRPGACITNSARERKINSSLQLPDRVLNFLKDHF 414

  Fly   474 LMDKAVDHEFGNPVFFKRDVILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHS 538
            |||..|....   :..:......::.|.  |:..|:..:.|.|:.|..|.::|.|..    ....
Mouse   415 LMDGQVRSRL---LLLQPRARYQRVAVH--RVPGLHSTYDVLFLGTGDGRLHKAVTL----SSRV 470

  Fly   539 NLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDPYCGWDK 601
            ::::..:..|..:|::.:.|....|.||.::...|.|:.:|.|: .|.:|..|:  .||||.|..
Mouse   471 HIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCS-LYPTCGDCLLARDPYCAWTG 534

  Fly   602 DVNACR---PYQLGL-----LQDVAN-ETSGICDTSVLR----------KKVTSSYGQTLHLSCF 647
              :|||   .||..|     .||:.. ....:|..|..:          |:|.........|:| 
Mouse   535 --SACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPGKPCKQVQIQPNTVNTLAC- 596

  Fly   648 VKMPEVLRKKQTR-WYHHSTE-KGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLDGTLL 710
                .:|....|| |.|:... ......|..||       |.|:|:...:|.|            
Mouse   597 ----PLLSNLATRLWVHNGAPVNASASCRVLPT-------GDLLLVGSQQGLG------------ 638

  Fly   711 CSYGVTVDAHRCSPPSQKQDYQKIYSHWCNEFEKYKSAMKQWQAKQEQCGLKDKTGPISSNGKHV 775
                    ..:|.  |.::.:|::.:.:|.|..:        :...:|...:|.| |:..|...|
Mouse   639 --------VFQCW--SIEEGFQQLVASYCPEVME--------EGVMDQKNQRDGT-PVIINTSRV 684

  Fly   776 NDVFSNDALVXPRKYLYSFEFLSSATEGVASAHRKLYIFVFVL 818
            :......|.....|..:: |||...|         |::|..||
Mouse   685 SAPAGGRASWGADKSYWN-EFLVMCT---------LFVFAMVL 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 149/503 (30%)
Ig 632..720 CDD:299845 17/89 (19%)
Sema4bNP_001347064.1 Sema 48..511 CDD:417757 150/509 (29%)
PSI 512..558 CDD:396154 17/48 (35%)
Ig_Sema4B_like 579..663 CDD:409456 22/125 (18%)
Ig strand B 592..596 CDD:409456 1/3 (33%)
Ig strand C 604..608 CDD:409456 2/3 (67%)
Ig strand E 626..629 CDD:409456 1/2 (50%)
Ig strand F 639..644 CDD:409456 1/6 (17%)
Ig strand G 656..659 CDD:409456 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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