DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema3a

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_033178.2 Gene:Sema3a / 20346 MGIID:107558 Length:772 Species:Mus musculus


Alignment Length:812 Identity:226/812 - (27%)
Similarity:341/812 - (41%) Gaps:189/812 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 ARADYENTWNLYYEPPCCTGSSAAHHLR-HHKEHVQDFS-------CGPLHYKTFYMDERNNALY 135
            |||:|.|            |.:....|: .:||.::..:       .....|.||.:||..:.||
Mouse    18 ARANYAN------------GKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLY 70

  Fly   136 VGAMDRIFRLNLRNISQ--------SICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQP 192
            |||.|.||..||.||..        |...||            .|...||....||.|.|:|::.
Mouse    71 VGAKDHIFSFNLVNIKDFQKIVWPVSYTRRD------------ECKWAGKDILKECANFIKVLEA 123

  Fly   193 MNFNGQKLYVCGTNA-----------HNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNS 246
              :|...||.|||.|           |:|:|.:.....:|...         |.||.||||...:
Mouse   124 --YNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFEN---------GRGKSPYDPKLLT 177

  Fly   247 TAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFV 311
            .::.::.       .||:||.|:|...|..|||      |.|....  .||.::||:.|:.|.|:
Mouse   178 ASLLIDG-------ELYSGTAADFMGRDFAIFR------TLGHHHP--IRTEQHDSRWLNDPRFI 227

  Fly   312 GSFEIGEF-------VYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMN 369
            .:..|.|.       |||||||:|::..:.|||.::|:.::||||.||...:...|.|:||||:.
Mouse   228 SAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLI 292

  Fly   370 CSI--SSEFPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFK 429
            ||:  .:....:|:|:|.|:.|.:.|.|   .|..|||::|...|||||.|.:.|:...|.|.:.
Mouse   293 CSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYA 357

  Fly   430 EQATSNSAWLPVLNSKVPEPRPGTC-------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPV 487
            .:...|..|:| ...:||.||||||       .:.|..|||.|:.|.|.||.|...|......|:
Mouse   358 HRDGPNYQWVP-YQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPI 421

  Fly   488 FFKRDV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNLVDIFEASPHS 550
            ..|.||  ..|::|||  |:|..:.::.|.|:.|..|.:.|:|............|.:.|.:...
Mouse   422 MIKTDVNYQFTQIVVD--RVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFR 484

  Fly   551 EP--IREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VSDPYCGWDKDVNACRPY-- 609
            ||  |..|.||.|...||:.:...|.|:.:..|.....:|..|  ..||||.||.  ::|..|  
Mouse   485 EPTTISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDG--SSCSRYFP 547

  Fly   610 ---QLGLLQDVANETSGICDTSVLRKKVTSSYGQTL---------HLSCFVKMPEVLRKKQTRW- 661
               :....||:.| ...:...|.|:.. .:.:|.:|         :.|.|::.....::....| 
Mouse   548 TAKRRTRRQDIRN-GDPLTHCSDLQHH-DNHHGPSLEERIIYGVENSSTFLECSPKSQRALVYWQ 610

  Fly   662 YHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLDGTLLC---SYG-------VT 716
            :....|..:.|:|.  ..:|...|.||:|.::.:.|.|.|        ||   .:|       ||
Mouse   611 FQRRNEDRKEEIRM--GDHIIRTEQGLLLRSLQKKDSGNY--------LCHAVEHGFMQTLLKVT 665

  Fly   717 VDA----------HR--------------CSPPSQK---QDYQKIYSH--------WCNEFEKYK 746
            ::.          |:              ...||||   :|:.::.:|        :|.:.    
Mouse   666 LEVIDTEHLEELLHKDDDGDGSKIKEMSSSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQV---- 726

  Fly   747 SAMKQWQAKQEQCGLKDKTGPISSN-GKHVND 777
                 |:..::|...:......||| .||:.:
Mouse   727 -----WKRDRKQRRQRPGHSQGSSNKWKHMQE 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 165/500 (33%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250 22/135 (16%)
Ig strand B 642..646 CDD:409353 1/12 (8%)
Ig strand C 658..662 CDD:409353 1/4 (25%)
Ig strand E 686..690 CDD:409353 2/3 (67%)
Ig strand F 700..705 CDD:409353 1/4 (25%)
Ig strand G 717..720 CDD:409353 0/12 (0%)
Sema3aNP_033178.2 Sema_3A 26..518 CDD:200510 168/532 (32%)
PSI 516..>552 CDD:214655 11/37 (30%)
Ig_Sema3 580..671 CDD:409455 20/100 (20%)
Ig strand A 580..586 CDD:409455 1/5 (20%)
Ig strand B 591..599 CDD:409455 2/7 (29%)
Ig strand C 605..611 CDD:409455 1/5 (20%)
Ig strand C' 613..616 CDD:409455 0/2 (0%)
Ig strand D 626..630 CDD:409455 1/3 (33%)
Ig strand E 633..640 CDD:409455 3/6 (50%)
Ig strand F 646..655 CDD:409455 4/16 (25%)
Ig strand G 658..671 CDD:409455 2/12 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 729..772 6/25 (24%)

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