DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema3a

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001230001.1 Gene:Sema3a / 20346 MGIID:107558 Length:772 Species:Mus musculus


Alignment Length:812 Identity:226/812 - (27%)
Similarity:341/812 - (41%) Gaps:189/812 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 ARADYENTWNLYYEPPCCTGSSAAHHLR-HHKEHVQDFS-------CGPLHYKTFYMDERNNALY 135
            |||:|.|            |.:....|: .:||.::..:       .....|.||.:||..:.||
Mouse    18 ARANYAN------------GKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLY 70

  Fly   136 VGAMDRIFRLNLRNISQ--------SICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQP 192
            |||.|.||..||.||..        |...||            .|...||....||.|.|:|::.
Mouse    71 VGAKDHIFSFNLVNIKDFQKIVWPVSYTRRD------------ECKWAGKDILKECANFIKVLEA 123

  Fly   193 MNFNGQKLYVCGTNA-----------HNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNS 246
              :|...||.|||.|           |:|:|.:.....:|...         |.||.||||...:
Mouse   124 --YNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFEN---------GRGKSPYDPKLLT 177

  Fly   247 TAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFV 311
            .::.::.       .||:||.|:|...|..|||      |.|....  .||.::||:.|:.|.|:
Mouse   178 ASLLIDG-------ELYSGTAADFMGRDFAIFR------TLGHHHP--IRTEQHDSRWLNDPRFI 227

  Fly   312 GSFEIGEF-------VYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMN 369
            .:..|.|.       |||||||:|::..:.|||.::|:.::||||.||...:...|.|:||||:.
Mouse   228 SAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLI 292

  Fly   370 CSI--SSEFPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFK 429
            ||:  .:....:|:|:|.|:.|.:.|.|   .|..|||::|...|||||.|.:.|:...|.|.:.
Mouse   293 CSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYA 357

  Fly   430 EQATSNSAWLPVLNSKVPEPRPGTC-------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPV 487
            .:...|..|:| ...:||.||||||       .:.|..|||.|:.|.|.||.|...|......|:
Mouse   358 HRDGPNYQWVP-YQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPI 421

  Fly   488 FFKRDV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNLVDIFEASPHS 550
            ..|.||  ..|::|||  |:|..:.::.|.|:.|..|.:.|:|............|.:.|.:...
Mouse   422 MIKTDVNYQFTQIVVD--RVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFR 484

  Fly   551 EP--IREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VSDPYCGWDKDVNACRPY-- 609
            ||  |..|.||.|...||:.:...|.|:.:..|.....:|..|  ..||||.||.  ::|..|  
Mouse   485 EPTTISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDG--SSCSRYFP 547

  Fly   610 ---QLGLLQDVANETSGICDTSVLRKKVTSSYGQTL---------HLSCFVKMPEVLRKKQTRW- 661
               :....||:.| ...:...|.|:.. .:.:|.:|         :.|.|::.....::....| 
Mouse   548 TAKRRTRRQDIRN-GDPLTHCSDLQHH-DNHHGPSLEERIIYGVENSSTFLECSPKSQRALVYWQ 610

  Fly   662 YHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLDGTLLC---SYG-------VT 716
            :....|..:.|:|.  ..:|...|.||:|.::.:.|.|.|        ||   .:|       ||
Mouse   611 FQRRNEDRKEEIRM--GDHIIRTEQGLLLRSLQKKDSGNY--------LCHAVEHGFMQTLLKVT 665

  Fly   717 VDA----------HR--------------CSPPSQK---QDYQKIYSH--------WCNEFEKYK 746
            ::.          |:              ...||||   :|:.::.:|        :|.:.    
Mouse   666 LEVIDTEHLEELLHKDDDGDGSKIKEMSSSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQV---- 726

  Fly   747 SAMKQWQAKQEQCGLKDKTGPISSN-GKHVND 777
                 |:..::|...:......||| .||:.:
Mouse   727 -----WKRDRKQRRQRPGHSQGSSNKWKHMQE 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 165/500 (33%)
Ig 632..720 CDD:299845 21/117 (18%)
Sema3aNP_001230001.1 Sema_3A 26..518 CDD:200510 168/532 (32%)
PSI 516..>552 CDD:214655 11/37 (30%)
Ig_Sema3 580..671 CDD:409455 20/100 (20%)
Ig strand B 594..598 CDD:409455 1/3 (33%)
Ig strand C 606..610 CDD:409455 0/3 (0%)
Ig strand E 633..637 CDD:409455 2/3 (67%)
Ig strand F 647..652 CDD:409455 3/12 (25%)
Ig strand G 664..667 CDD:409455 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 729..772 6/25 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 51 1.000 Domainoid score I11477
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.910

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