DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema2b and LOC1276412

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_061507582.1 Gene:LOC1276412 / 1276412 VectorBaseID:AGAMI1_008189 Length:820 Species:Anopheles gambiae


Alignment Length:583 Identity:194/583 - (33%)
Similarity:298/583 - (51%) Gaps:101/583 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 LSALLLVLVAQ-TVHVEYARADYENTWNLYYEP--PCCTGSSAAHHLRHHKEHVQDFSCGPLHYK 123
            |:|..|.:::| .|.|:....|.::...:.|:.  |...|:|..                  ::|
Mosquito    41 LAAAALFIISQCVVRVDSWVPDVQSKIRIPYDATVPSFFGNSTD------------------YFK 87

  Fly   124 TFYMDER------NNALYVGAMDRIFRLNLRNIS--QSICERDVLILEPTGSDILNCVSKGKREK 180
            ....:|:      .||:|..::||:..|..:.||  .|...|::            |..|||.|:
Mosquito    88 LLDANEQYILIGARNAVYNISIDRLVELPGQRISWPSSDAHREL------------CTLKGKHEQ 140

  Fly   181 VECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGI---------G 236
             :|:|:|||...:|.|  ::.|||||:..|.....|.          :||.|..:         |
Mosquito   141 -DCQNYIRVFARINAN--RIMVCGTNSFKPLCRYYNV----------LPGNGSLVYDNNELEAQG 192

  Fly   237 KCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYD 301
            :|||:|..|||.||.:.       .||:.|.|:|:.||::|:|..             :||.::|
Mosquito   193 RCPYNPQHNSTYVYTDG-------QLYSATVADFSGADALIYREP-------------QRTEQFD 237

  Fly   302 SKLLDKPNFVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKA 366
            ||.|::|.||.:.|...:|.||:||.|:||:|||||:||||:||||||:||.|.....|.::|||
Mosquito   238 SKQLNQPAFVSAIEYNGYVMFFYREVAMEYMNCGKAIYSRVSRVCKNDKGGPYPFQDKWTSFLKA 302

  Fly   367 RMNCSISSEFPFYFNEIQSVYKMPTD------DTKFYATFTTNTNGLIGSAVCSYDIRDINAAFD 425
            |:||||..|:||||:|:|:.....:.      :...|...||..|.:.|||||::.:.||..||:
Mosquito   303 RLNCSIPGEYPFYFDELQATTNAISGTYGGVRNKIIYGIMTTPENAIGGSAVCAFSVEDIMEAFE 367

  Fly   426 GKFKEQATSNSAWLPVLNSKVPEPRPGTCHNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFK 490
            |.||.|...:|.||.|..|.|||||||.|.:|:.|||.:::||::.:.|||.:|......|||.:
Mosquito   368 GPFKAQRDIHSNWLQVPPSAVPEPRPGKCVDDSRTLPKALVNFVKTNNLMDSSVPSVHSRPVFTR 432

  Fly   491 RDVI--LTKLVVDKIRIDKLN-QEFLVYFVATTSGHIYKIVQFMHYGQR---HSNLVDIFEASPH 549
            ..:.  |:.:.||. ::..|: |.:.|.||.|..|.:.|.|..:.....   .:.::...:|.|.
Mosquito   433 VSLYYRLSAIAVDP-QVKALDGQRYDVIFVGTNDGKVIKFVNILSANTSDDVRTVVISETQAFPP 496

  Fly   550 SEPIREMTLSHKTGSLYVATDHQVKQIDIAMC-ARRYDSCFRC--VSDPYCGWDKDVNA-CRP 608
            ...|.|||:|.|..:|.|.:..::..:.:..| ...:.:|.:|  :.||||.|| |:|. |:|
Mosquito   497 GTKINEMTISKKNAALIVISSGKIISLPLHTCNEHSFKTCRKCLDLQDPYCAWD-DLNRDCKP 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 170/487 (35%)
PSI 583..>606 CDD:396154 10/25 (40%)
Ig 632..724 CDD:472250
Ig strand B 642..646 CDD:409353
Ig strand C 658..662 CDD:409353
Ig strand E 686..690 CDD:409353
Ig strand F 700..705 CDD:409353
Ig strand G 717..720 CDD:409353
LOC1276412XP_061507582.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.