DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and SEMA6B

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_011525941.1 Gene:SEMA6B / 10501 HGNCID:10739 Length:894 Species:Homo sapiens


Alignment Length:653 Identity:208/653 - (31%)
Similarity:311/653 - (47%) Gaps:138/653 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 NNALYVGAMDRIFRLNLR-NISQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMN 194
            |..|::|..|.::|:.|. ..|..:..:..|......|||..|..|||:|. ||||.::|:  :.
Human    74 NRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWRSNPSDINVCRMKGKQEG-ECRNFVKVL--LL 135

  Fly   195 FNGQKLYVCGTNAHNP--KDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYVENGNPF 257
            .:...|:|||:||.||  .:|.|:   |..|....:.    |:.:|||||...:.|::.:.    
Human   136 RDESTLFVCGSNAFNPVCANYSID---TLQPVGDNIS----GMARCPYDPKHANVALFSDG---- 189

  Fly   258 GLPALYAGTNAEFTKADSVIFRS--DLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFEIGEFV 320
               .|:..|..:|...|:||:||  |...|          ||||:|||...:|.||.:.|.|..|
Human   190 ---MLFTATVTDFLAIDAVIYRSLGDRPTL----------RTVKHDSKWFKEPYFVHAVEWGSHV 241

  Fly   321 YFFFREHAVEYINCGKAVYSRVARVCKNDRGGK-YMISQNWATYLKARMNCSISSEFPFYFNEIQ 384
            ||||||.|:|:....|.|.||||||||||.||. .::.:.|.::||||:|||:..:..||||.:|
Human   242 YFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQ 306

  Fly   385 SVYKMPTDDTK--FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVP 447
            :|..:.:...:  ..|.|:|.:|.:.|||||::|:..:.|.|:|:|:||.:..|.|.||...:||
Human   307 AVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQVP 371

  Fly   448 EPRPGTC------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVI---LTKLVVDKI 503
            .||||.|      :|.::.|||.:|||::.|||||:||. ..|:..:..|.::   ||::.||..
Human   372 RPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDEAVP-SLGHAPWILRTLMRHQLTRVAVDVG 435

  Fly   504 RIDKLNQ-------------EFLVYFVATTSG----HIYKIVQFMHY-------------GQRHS 538
            .....||             :|||...|:|||    .:: :.:|..|             |||  
Human   436 AGPWGNQTVVFLGSEAGTVLKFLVRPNASTSGTSGLSVF-LEEFETYRPDRCGRPGGGETGQR-- 497

  Fly   539 NLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFR-------CV--SD 594
                          :..:.|...:|.|..|....|.::.:|.| ::|..|.:       |:  .|
Human   498 --------------LLSLELDAASGGLLAAFPRCVVRVPVARC-QQYSGCMKSLVCSRNCIGSQD 547

  Fly   595 PYCGWDKDVNACRPYQLG----LLQDVAN-ETSGICD-TSVLRKK--------------VTSSYG 639
            |||||..| .:|.....|    ..|||:. .|||:.| |.:||..              ||||  
Human   548 PYCGWAPD-GSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLSEDRAGLVSVNLLVTSS-- 609

  Fly   640 QTLHLSCFVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVN-------EGD 697
                ::.|| :..|:......|:....|: |...|....:.|..:..|..:|:|:       :|.
Human   610 ----VAAFV-VGAVVSGFSVGWFVGLRER-RELARRKDKEAILAHGAGEAVLSVSRLGERRAQGP 668

  Fly   698 GGR 700
            |||
Human   669 GGR 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 165/494 (33%)
Ig 632..720 CDD:299845 19/90 (21%)
SEMA6BXP_011525941.1 Sema_6B 57..524 CDD:200528 165/494 (33%)
PSI 525..>560 CDD:279745 12/36 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.910

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