DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and sema4gb

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_003199679.2 Gene:sema4gb / 100534852 ZFINID:ZDB-GENE-111117-1 Length:881 Species:Danio rerio


Alignment Length:647 Identity:187/647 - (28%)
Similarity:289/647 - (44%) Gaps:126/647 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 FSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILE--PTGSDILNCVSKGK 177
            |....|:|.:..:::....|||||.:.|::|:..|||.:   .:.|.||  .:......|:||||
Zfish    49 FQGAALNYSSLLLEDGPGVLYVGAREAIYKLDTANISDT---NNSLTLEWAASADQKRQCLSKGK 110

  Fly   178 REKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPK-DYVINANLTHLPRSQYVPGIGLGIGKCPYD 241
            ..:.||.||:|.:.  .:|...||.|||:|..|: .|:..|..|.:...:       |..|||||
Zfish   111 NNQTECYNHVRFLD--RYNDTHLYTCGTHAFRPRCAYIDVARFTFVRFEE-------GKEKCPYD 166

  Fly   242 PADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLD 306
            |....|...::.       .:|:.:..||                  |..|:.:|...:.:..:|
Zfish   167 PTKGYTGFIIDG-------EMYSASQYEF------------------RNIADIRRNFPFPNLRID 206

  Fly   307 --------KPNFVGSFEIGEFV----------YFFFREHAVEYINCGKAVYS------RVARVCK 347
                    :.:||||..:.|.:          ||||.|.     |.....||      |||||||
Zfish   207 DSPTRWLLESDFVGSALLRESINSSIGDDDKLYFFFTER-----NTEPTAYSIQTKVARVARVCK 266

  Fly   348 NDRGGKYMISQNWATYLKARMNCSISSEFPFYFNEIQSVYKMP---TDDTKFYATFTTNTNGLIG 409
            .|.||:..:.:.|.::||||:.|:| .::...||.::||:.:.   ..|:.||..|......:..
Zfish   267 GDIGGQRTLQRKWTSFLKARLVCAI-PDYELQFNVLRSVFVVEGSNVHDSVFYGIFGLEWRNVKM 330

  Fly   410 SAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC----H-----NDTATLPDSV 465
            ||||.|.::||..||:|.|.|  ..:|.|.. ...|||:||||:|    |     |.:..|||:.
Zfish   331 SAVCRYSLKDIQTAFNGPFME--LQDSKWRE-YTGKVPDPRPGSCITDEHRGKLINSSRDLPDNT 392

  Fly   466 LNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKIR-IDKLNQEFLVYFVATTSGHI---YK 526
            |||:|:||||...:....|.|:..::....||::|.::. :|....:.|  |:.|..|.:   .|
Zfish   393 LNFVRRHPLMSTQIQPVEGRPLLLQKAADYTKIIVQQVEGLDGRTYDML--FIGTDEGWLQRAVK 455

  Fly   527 IVQFMHYGQRHSNLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC 591
            |:..:|       :::..:.....:||..|.:|.|..|:||:....:.|:.::.| .||.||:.|
Zfish   456 IIDRVH-------IIEELQLFQEKQPIINMVISQKQNSIYVSGASGLVQVPLSSC-ERYTSCYDC 512

  Fly   592 V--SDPYCGWDKDVNA-CRPY--QLGLLQDV-------ANETSGICDTSVLRKKVTSSYGQTLHL 644
            |  .||.||||..:.| ...|  :..|:||:       :|.||   |..|:.:......|..:.|
Zfish   513 VFARDPLCGWDGRMCAEIASYANRSSLVQDIQMGRRGCSNITS---DGFVMHRTRAVMAGDDVLL 574

  Fly   645 SCFVKMPEVLRKKQT-RWYHHSTE-KGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSY 704
            .|     |:.....| :|..:|.| ||     |.......|...||:::.......|.|..|
Zfish   575 QC-----EIRSNLATPQWTLNSQELKG-----YGVDSGYRTGTDGLLIIGAQNQQSGHYRCY 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 146/501 (29%)
Ig 632..720 CDD:299845 17/75 (23%)
sema4gbXP_003199679.2 Sema_4G 47..501 CDD:200523 147/506 (29%)
PSI 502..>541 CDD:279745 16/39 (41%)
Ig 561..646 CDD:299845 17/76 (22%)
IG_like 566..643 CDD:214653 17/71 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
43.870

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