DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema2b and sema3b

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001120908.1 Gene:sema3b / 100151737 XenbaseID:XB-GENE-921561 Length:773 Species:Xenopus tropicalis


Alignment Length:773 Identity:214/773 - (27%)
Similarity:342/773 - (44%) Gaps:143/773 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 KGKHRLCSLSALLLV-LVAQTVHVEYARADYENTWNLY------YEPPCCTGSSAAHHLRHHKEH 111
            |.:..|.||..||.. |:.........:..|::..:|:      .|..||               
 Frog     2 KLQRSLLSLCLLLYFGLIGSNKVTPRLKLSYQDLMSLHGLRTFTLERSCC--------------- 51

  Fly   112 VQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDIL-NCVSK 175
                      |...::||....|:||..:.:..|:|.|||    ::::.|..|...:.. .|...
 Frog    52 ----------YDALFLDEERGRLFVGGKNYLMSLSLDNIS----KQELAIHWPAPVEWREECNWA 102

  Fly   176 GKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNP-----------KDYVINANLTHLPRSQYVP 229
            ||...|:|.|:::::||  :|...|:.|||.|.:|           .|.|...:|..:..     
 Frog   103 GKDINVDCMNYVKILQP--YNRTHLFTCGTGAFHPTCGFVHVGQRTDDTVFKMDLRRMED----- 160

  Fly   230 GIGLGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANF 294
                |.|:|||||...:.||.|.:       .||:|...:....|..||||      .||:..  
 Frog   161 ----GKGRCPYDPKHIAAAVLVGD-------ELYSGVATDLMGRDFTIFRS------LGRRPP-- 206

  Fly   295 KRTVKYDSKLLDKPNFVGSFEIGEF-------VYFFFREHAVEYINCGKAVYSRVARVCKNDRGG 352
            .||.::||:.|::|.||..|.|.|.       :||||:|..||.....|..|:|:.::|:||.||
 Frog   207 LRTEQHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFKETPVEGAGGVKQSYARIGQICRNDLGG 271

  Fly   353 KYMISQNWATYLKARMNCSI-SSEF--PFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSA 411
            :..:...|.|:||||:.||: .:|.  ..:|:|::.|:.:.|.|.:   .||.|:|:::...|||
 Frog   272 QRSLVNKWTTFLKARLVCSVPGNEIGGDTHFDELRDVFLLQTRDRRNPLIYALFSTSSSVFRGSA 336

  Fly   412 VCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC-------HNDTATLPDSVLNFI 469
            :|.|.:.|:..||.|.|..:...|..|:. ...|||.||||.|       ...|.:.||.||.|.
 Frog   337 ICVYTMNDVRRAFLGPFAHKEGPNYQWVS-YQGKVPYPRPGMCPSKTFGSFESTKSFPDDVLQFA 400

  Fly   470 RKHPLMDKAVDHEFGNPVFFKR--DVILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMH 532
            |.||||...|....|.|||.:.  |:..|:|.||  |:...:.|:.|.|:.|..|.:.|::....
 Frog   401 RNHPLMFNPVVPGSGRPVFLRSHGDLSFTQLAVD--RVAAADGEYDVMFIGTDVGSVLKVISVPK 463

  Fly   533 YGQRHSNLVDIFEAS--PHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VS 593
            ....|...|.:.|..  .::.||..|.:|.|...:||.:...:.|:.:..|.....:|..|  ..
 Frog   464 QSWHHVEQVVLEELQVFKNASPITTMQISSKRQQIYVGSASGISQLPLHRCGIYGKACAECCLAR 528

  Fly   594 DPYCGWDKDVNACRPY-----QLGLLQDVAN-ETSGICD-----TSVLRKKVTSSYGQTLHLSCF 647
            ||||.||.  .:|..:     :....|||.| :.:.:|.     .||..|::....|.::.|.| 
 Frog   529 DPYCAWDG--ASCTRFLPNTKRRSRRQDVRNGDPNTLCSGEQQRFSVQEKRLLGVEGSSIFLEC- 590

  Fly   648 VKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLDGTLLC- 711
              :|:.||.:.|..|..:.|..|.||:: ..:.:.|:. |:|:..|...|.        ||.:| 
 Frog   591 --LPKSLRAQVTWTYQKAPESSRTEVQF-DERVLQTDR-GIVVRNVLRRDA--------GTFICY 643

  Fly   712 --SYGVTVDAHRCS----PPSQKQDY---QKI-YSHWCNEFEKYKSAMKQWQAKQEQC 759
              .:|.|....|..    |.|:.:::   |:: ::.|..:|.:   .::|..:.::.|
 Frog   644 SSEHGFTQTLLRLHLEVIPSSRTEEHLGLQRVPHNRWYQDFMR---LVQQPGSVEQMC 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 154/494 (31%)
Ig 632..720 CDD:299845 23/90 (26%)
sema3bNP_001120908.1 Sema_3B 43..514 CDD:200511 157/528 (30%)
PSI 513..550 CDD:214655 10/38 (26%)
Ig 575..663 CDD:299845 24/100 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153798at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X596
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

Return to query results.
Submit another query.