DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and sema6d

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001120152.1 Gene:sema6d / 100145190 XenbaseID:XB-GENE-967070 Length:1084 Species:Xenopus tropicalis


Alignment Length:715 Identity:219/715 - (30%)
Similarity:333/715 - (46%) Gaps:150/715 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 LLVLVAQTVHVEYARAD---------YENTWNLYYEPPCCTGSSAAHHLRHHKEHVQDFSCGPLH 121
            ||:.|:....|.:...|         |...:.::...|  :|:.:.|.|        ||.     
 Frog    11 LLLTVSTVCAVSFPEDDEPINVVDYHYSRQYPVFRGRP--SGNDSQHSL--------DFQ----- 60

  Fly   122 YKTFYMDERNNALYVGAMDRIFRLNLRNISQS-ICERDVLILEPTGSDILNCVSKGKREKVECRN 185
                .|.:..:.|||...|:::.:||..:.:: :.....|......:|..||..||| .|.||.|
 Frog    61 ----LMLKIRDTLYVAGRDQVYAINLNEVPKTEVTPSRRLTWRSGQADRKNCAMKGK-HKDECHN 120

  Fly   186 HIRVIQPMNFNGQKLYVCGTNAHNP--KDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTA 248
            :|:|..|.  |.:.::||||||.||  :.|.:|.       ..|......|:.:||:|....:.|
 Frog   121 YIKVFVPR--NDEMVFVCGTNAFNPMCRYYRLNT-------FDYDGEEISGLARCPFDARQTNVA 176

  Fly   249 VYVENGNPFGLPALYAGTNAEFTKADSVIFRS--DLYNLTNGRKEANFKRTVKYDSKLLDKPNFV 311
            ::.:.       .||:.|.|:|..:|:||:||  |.:.|          ||:|||||.|.:|:|:
 Frog   177 LFADG-------KLYSATMADFQASDAVIYRSMGDGFAL----------RTIKYDSKWLKEPHFL 224

  Fly   312 GSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGG-KYMISQNWATYLKARMNCSISSE 375
            .:.|.|.::||||||.|||:.|.||||:|||||:||||.|| :.::.::|.:::|||:|||:..:
 Frog   225 HAIEYGNYIYFFFREIAVEHNNLGKAVHSRVARICKNDLGGSQRVLEKHWTSFVKARLNCSVPGD 289

  Fly   376 FPFYFNEIQSVYK------MPTDDTKFYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATS 434
            ..|||:.:||:..      :||    ....|||..|.:.|||||::.:.||...|.|:||||.|.
 Frog   290 SFFYFDVLQSITDIIEINGIPT----VVGVFTTQLNSIPGSAVCAFTMDDIEKVFRGRFKEQKTP 350

  Fly   435 NSAWLPVLNSKVPEPRPGTC--------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKR 491
            :|.|..|...:||:||||.|        :..:...||..|:||:.|||||.|:......|.|.|.
 Frog   351 DSVWTAVPEDRVPKPRPGCCARHGYGEGYRSSTEFPDETLSFIKSHPLMDSAIPSIIEEPWFTKT 415

  Fly   492 DV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMH-YGQRHSNLVDIFEA------S 547
            .|  .||.:.||.:....||  :.|.||.:.:|.:.||:...: :....|.|::..:|      |
 Frog   416 RVRYRLTAVAVDHLAGPYLN--YTVMFVGSEAGVVLKILAKTNPFSLNDSVLLEEIDAYNRAKCS 478

  Fly   548 PHSEPIR-----EMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFR-CVS--DPYCGW----- 599
            .:||..|     :|...|.  :|:||....:.::.::.| .||.||.: |:.  ||||||     
 Frog   479 GNSEEDRKVISLQMDRDHH--ALFVAFSGCIVRLPLSRC-ERYGSCKKSCIGARDPYCGWLNHES 540

  Fly   600 ------------DKDVNACRPYQLGLLQDV------------ANETSGICDTSVLRKKVTSSYGQ 640
                        ::||......|||...|:            .:.||   |..|....||::   
 Frog   541 CGRVKPGMFFGYEQDVEYGNTVQLGDCHDILPTATTPDYKIFGDPTS---DIEVPSTSVTTT--- 599

  Fly   641 TLHLSCFVKMPEVLRKKQTRWYHHSTEKGRYEVRYTP--TKYIDTNEG---GLVLLAVNEGDGGR 700
                    ..|.:|.|....|....|...::..:..|  ::|||...|   | |...|..||..:
 Frog   600 --------SSPVILPKVIGSWKPRMTGSRKFIYQDDPNTSEYIDPLTGVQKG-VRWEVQSGDANQ 655

  Fly   701  700
             Frog   656  655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 168/492 (34%)
Ig 632..720 CDD:299845 17/74 (23%)
sema6dNP_001120152.1 Sema_6D 49..513 CDD:200530 173/515 (34%)
PSI 514..>543 CDD:396154 12/29 (41%)
ARG80 <829..1080 CDD:227400
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 283 1.000 Inparanoid score I2804
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.060

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