DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Cht12 and AT4G19720

DIOPT Version :9

Sequence 1:	NP_726022.1	Gene:	Cht12 / 246535	FlyBaseID:	FBgn0050293	Length:	470	Species:	Drosophila melanogaster
Sequence 2:	NP_001319998.1	Gene:	AT4G19720 / 827716	AraportID:	AT4G19720	Length:	363	Species:	Arabidopsis thaliana

Alignment Length:	373	Identity:	88/373 - (23%)
Similarity:	146/373 - (39%)	Gaps:	83/373 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    47 LDSRLCTHLVLG--------SGIGVDG-DSGELRITDKILLLEKDKLSSVKTMKWDSIKKVMFTI 102
            :||.|.|||...        :.:.|.| ...|.....||:   |.|...|:|         :.:|
plant    33 IDSTLFTHLFCAFADLDPQTNSVVVSGAHEQEFSNFTKIV---KKKNPHVQT---------LLSI 85

  Fly   103 GGWEEDSSSFSRMVASPKKRDNFYSSMLEFMFRWGFDGVQIDWRYPTLLGGHPDD--RQNFVILL 165
            ||...|.|:|:.|.::|..|.:|..|.:.....:.|||:.:.|:||      .||  .:||..||
plant    86 GGRNADKSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYP------KDDVEMRNFGQLL 144

  Fly   166 EELGLIFR-----------KNQLILMVAVLGRRDNRILE--SYNIPEIVNHSDFIHLMMHDEQDP 217
            |:    :|           :..|:|..||.   .:.:.:  ||.|.||....|:::|:.:|.
plant   145 EQ----WREAIEDDAERTERMPLLLTAAVY---YSPVYDSVSYPIREIKKKLDWVNLIAYDF--- 199

  Fly   218 YHLRLAYNAPLVGYE-----GSVTD-SIMHWKRNGGAPEKLILGIPLFVRSFTM----DRNQSTV 272
            |........|...::     |...| .:..|.:.|...:|.:||.|....::::    |...|.|
plant   200 YSSSTTIGPPAALFDPSNPKGPCGDYGLKEWIKAGLPAKKAVLGFPYVGWTWSLGSGNDAATSRV 264

  Fly   273 GSACKGPGRQTKQSHRPGFMTYNE--WCVQQSKWSRMFDQLAKVPYATRGDQWVSYENPRSIWAK 335
            .::.:|.            :.|::  ..:...|...:||......|...|...:.|::.:|:.||
plant   265 ATSAEGS------------INYDQIKRLIVDHKARPVFDSTVVGDYCFAGTSLIGYDDHQSVVAK 317

  Fly   336 MHLLQEHKLGGAMAWTIDVDDFRGRCGEQHGLLRVIFSALGDKNGLTT 383
            :...::..|.|..:|.:..||       ..||.|....|...|...||
plant   318 VKYAKQKGLLGYFSWHVGADD-------NFGLSRAASQAWDAKETKTT 358

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Cht12	NP_726022.1	GH18_chitinase-like	25..375	CDD:299167	84/363 (23%)
		Glyco_hydro_18	47..355	CDD:279094	79/343 (23%)
		ChtBD2	394..438	CDD:214696
AT4G19720	NP_001319998.1	GH18_plant_chitinase_class_V	3..343	CDD:119358	82/356 (23%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG3325
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	160	1.000	Inparanoid score	I1632
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000107
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11177
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X91
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	7	6.920