DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht12 and ctbs

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001011500.1 Gene:ctbs / 497004 XenbaseID:XB-GENE-975891 Length:369 Species:Xenopus tropicalis


Alignment Length:402 Identity:86/402 - (21%)
Similarity:149/402 - (37%) Gaps:120/402 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFMIMIFLIC--GCIAKEYNVFCQ-------YDLGSYYYKGRS-QFFEWHLDSRLCTHLVLGSGI 61
            :|:::...:|  ||...:..: |:       :::..:|.||:: :|::|   |::.|..:.|.  
 Frog    14 LFIMLCVSLCAAGCPCTDPRL-CEPITDSRDFEVLVFYTKGKNWKFYDW---SQVTTIALFGK-- 72

  Fly    62 GVDGDSGELRITDKILLLEKDKLSSVKTMKWDSIKKVMFTIGGWEEDSSSFSRMVASP-----KK 121
                       .|..||.......:...:|.|                      |..|     |.
 Frog    73 -----------YDPELLCFAHSKGARLVLKGD----------------------VPLPYIVDLKN 104

  Fly   122 RDNFYSSMLEFMFRWGFDGVQIDWRYPTLLGGHPDDRQNFVILLEELGLIFRK----NQLILMVA 182
            |.::.:..:|.......||:.:|.. .::|.|.| :......|:||....|.:    :|:...||
 Frog   105 RTSWITQKVELAKSQFMDGINLDIE-QSVLKGSP-EYYALTALVEETTEAFHREIPGSQVTFDVA 167

  Fly   183 -----VLGRRDNRILESYNIPEIVNHSDFIHLMMHDEQDPYHLR--LAYNAP----LVGYEGSVT 236
                 |    |.|   .||...|....||:.:|.:|||......  .:.|:|    |.||:....
 Frog   168 WSPDCV----DER---CYNYTGIAESCDFLFVMSYDEQSQIWTECVASANSPLNKTLSGYQKFTQ 225

  Fly   237 DSIMHWKRNGGAPEKLILGIPLFVRSF---TMDRNQSTV------GSACK-GPGRQ------TKQ 285
            ..|        .|:||::|:|.:...:   .::.|..|:      |:.|. ..|:|      |||
 Frog   226 LDI--------DPKKLVMGVPWYGYDYPCLDLEDNNCTLKEVPFRGAPCSDAAGKQIPYSKITKQ 282

  Fly   286 SHRPGFMTYNEWCVQQSKWSRMFDQLAKVPYATRGD-----QWVSYENPRSIWAKMHLLQEHKLG 345
                         |..|...|::|.:.|.|:....|     ..|.|::|.||..|...:::..|.
 Frog   283 -------------VNSSLTGRLWDDVQKSPFYNYKDAKGQFHQVWYDDPVSISLKSAYIKKLGLR 334

  Fly   346 GAMAWTIDVDDF 357
            |...|..|:.|:
 Frog   335 GIGMWNGDLLDY 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 82/382 (21%)
Glyco_hydro_18 47..355 CDD:279094 75/348 (22%)
ChtBD2 394..438 CDD:214696
ctbsNP_001011500.1 GH18_chitobiase 9..363 CDD:119354 86/402 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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