DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht12 and chia.3

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_998378.1 Gene:chia.3 / 406819 ZFINID:ZDB-GENE-040426-2891 Length:471 Species:Danio rerio


Alignment Length:477 Identity:136/477 - (28%)
Similarity:216/477 - (45%) Gaps:71/477 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LICG-----C-IAKEYNVFCQYDLGSYYYKGRSQFFEWHLDSRLCTHLVLGSGIGVDGDSGELRI 72
            ||.|     | :|....:.|.:...|.|..|..::...::|..|||||:.  ...:.....|| :
Zfish     6 LIAGLSLVLCHVAFSMEMACYFTNWSQYRPGIGKYTPANVDPYLCTHLIY--AFSIINQRNEL-V 67

  Fly    73 T----DKILLLE----KDKLSSVKTMKWDSIKKVMFTIGGWEEDSSSFSRMVASPKKRDNFYSSM 129
            |    |:.|...    |:|..::||         :..:|||...|:.||.||::|..|..|..|.
Zfish    68 TYEWNDETLYKAFNELKNKNPTLKT---------LLAVGGWNFGSAQFSIMVSNPANRKTFIQST 123

  Fly   130 LEFMFRWGFDGVQIDWRYPTLLGGHPDDRQNFVILLEELGLIFRK------NQLILMVAVLGRRD 188
            ::|:...||||:.:||.||...|..|:|:|.|.:|.:||...:..      |..:::.|.:....
Zfish   124 IKFLRTHGFDGLDLDWEYPGARGSPPEDKQRFTLLCKELVAAYEAESKATGNPQLMLTAAVSAGK 188

  Fly   189 NRILESYNIPEIVNHSDFIHLMMHDEQDPYHLRLAYNAPLVGYEGSV---------TDSIM-HWK 243
            ..|.:.|.|.||..:.:||::|.:|....:.....:|:||  |:||.         ||..| :|:
Zfish   189 GTIDDGYEIAEIAKYLNFINVMTYDFHGTWERFTGHNSPL--YQGSKDEGDLIYFNTDYAMRYWR 251

  Fly   244 RNGGAPEKLILGIPLFVRSFTMDRNQSTVGSACKGPGRQTKQSHRPGFMTYNEWC--VQQSKWSR 306
            .||...|||.:|...:.|:|.:..:.::||:...||......:...||.:|.|.|  ::.:....
Zfish   252 DNGTPVEKLRMGFAAYGRTFRLTSSDTSVGAPASGPASAGTYTREAGFWSYYEICGFLEGTTIQW 316

  Fly   307 MFDQLAKVPYATRGDQWVSYENPRSIWAKMHLLQEHKLGGAMAWTIDVDDFRGR-CGE-QHGLLR 369
            :.||  ||||||:..:||.::...|...|:..|::...|||..|.:|:|||.|: |.: .|.|:.
Zfish   317 IDDQ--KVPYATKNSEWVGFDTKESYETKVRYLKDKNFGGAFVWALDLDDFAGQFCSQGNHPLMA 379

  Fly   370 VIFSALG-----------DKNGLTTEKPTTEAS--------GLC--PHDGFSRDGWDCRLYHECR 413
            .:.:.|.           .|.|.:|.:|||..:        |.|  ..||......|...|:.|.
Zfish   380 HLRNLLDIELPPMPSTTTPKPGQSTTRPTTTTTTTTHAPGPGFCNGKPDGLYAHPNDPNKYYSCA 444

  Fly   414 DGERIYYECLEGQYFDENQIVC 435
            .|.....:|..|..||::...|
Zfish   445 GGHTFVEKCAVGTVFDDSCKCC 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 111/377 (29%)
Glyco_hydro_18 47..355 CDD:279094 100/333 (30%)
ChtBD2 394..438 CDD:214696 12/44 (27%)
chia.3NP_998378.1 Glyco_18 24..363 CDD:214753 104/354 (29%)
GH18_chitolectin_chitotriosidase 25..385 CDD:119351 111/375 (30%)
ChtBD2 421..469 CDD:214696 13/46 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 1 1.000 - - FOG0000107
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X91
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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