DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht12 and chia.6

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_955897.2 Gene:chia.6 / 322420 ZFINID:ZDB-GENE-030131-1140 Length:480 Species:Danio rerio


Alignment Length:478 Identity:131/478 - (27%)
Similarity:205/478 - (42%) Gaps:95/478 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CQYDLGSYYYKGRSQFFEWHLDSRLCTHLVLGSGIGVDGDSGELRITDKILLLEKDKLSSVKTMK 91
            |.:...|.|.....::...::|..|||||:....|                :..::||:   |.:
Zfish    25 CYFTNWSQYRPDVGKYMPSNVDPHLCTHLIYAFSI----------------INNENKLT---TYE 70

  Fly    92 W---------DSIK------KVMFTIGGWEEDSSSFSRMVASPKKRDNFYSSMLEFMFRWGFDGV 141
            |         :.:|      |.:..:|||...::.||.||::|:.|..|..|.:.|:...||||:
Zfish    71 WNDETLYQSFNGLKQSNPNLKTLLAVGGWNFGTTQFSSMVSTPQNRQTFIQSSITFLRTHGFDGL 135

  Fly   142 QIDWRYPTLLGGHPDDRQNFVILLEELGLIFR-------KNQLILMVAVLGRRDNRILESYNIPE 199
            .:||.||...|..|:|:|.|.:|.:||...::       :.:|:|..||...:.| |...|.|.|
Zfish   136 DLDWEYPGSRGSPPEDKQRFTLLCKELVEAYQAESAATGRPRLMLTAAVAAGKGN-IDAGYEIAE 199

  Fly   200 IVNHSDFIHLMMHDEQDPYHLRLAYNAPLVGYEGSVTDSI--------MHWKRNGGAPEKLILGI 256
            |..:.|||::|.:|....:.....:|:||....|.:.|.|        .:|:..|...|||.:|.
Zfish   200 IAKYLDFINIMTYDFHGSWESVTGHNSPLYRGSGDIGDKIYYNTDFAMTYWRDQGAPVEKLRMGF 264

  Fly   257 PLFVRSFTMDRNQSTVGSACKGPGRQTKQSHRPGFMTYNEWC--VQQSKWSRMFDQLAKVPYATR 319
            ..:.|:|.:....|.||:...|.......:...||.:|.|.|  ::|:...::.||  ||||||:
Zfish   265 AAYGRTFRLSSAVSGVGAPASGAASAGTYTREAGFWSYYEICTFLKQATVQQIVDQ--KVPYATK 327

  Fly   320 GDQWVSYENPRSIWAKMHLLQEHKLGGAMAWTIDVDDFRGR-CGEQH----GLLRVIFSALGDKN 379
            |.:||.::|..|...|:..|:|...|||..|.:|:|||.|: ||:..    |.||.:.:.    |
Zfish   328 GQEWVGFDNMESYKTKVDYLKEKGFGGAFVWALDLDDFSGQFCGQSKYPLIGQLRTLLNI----N 388

  Fly   380 GL--------TTEKPT---TEASGLCPH---------------------DGFSRDGWDCRLYHEC 412
            ..        ||.||:   |.||...|:                     :|......|..:|..|
Zfish   389 NTEFPYNPPSTTVKPSGRPTRASATVPYATRPPVVPTAPSGSDFCTGKLEGIYEYPADSMIYIHC 453

  Fly   413 RDGERIYYECLEGQYFDENQIVC 435
            .:|......|.....||.:...|
Zfish   454 ANGRTFIQRCPAKTVFDPDCKCC 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 113/384 (29%)
Glyco_hydro_18 47..355 CDD:279094 101/339 (30%)
ChtBD2 394..438 CDD:214696 10/63 (16%)
chia.6NP_955897.2 Glyco_18 22..363 CDD:214753 104/359 (29%)
GH18_chitolectin_chitotriosidase 23..385 CDD:119351 113/381 (30%)
CBM_14 433..479 CDD:279884 9/44 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 1 1.000 - - FOG0000107
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X91
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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