DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cht12 and Chit1

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001073157.1 Gene:Chit1 / 289032 RGDID:1305646 Length:464 Species:Rattus norvegicus


Alignment Length:466 Identity:135/466 - (28%)
Similarity:218/466 - (46%) Gaps:58/466 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MIFLICGCIAKEYNVFCQYDLGSYYYKGRSQFFEWHLDSRLCTHLVLG-SGIGVDGDSGELRITD 74
            ::.:..|..||   :||.:...:.|..|.::|....:|..||||::.. :|:. :.....:...|
  Rat    13 LLMIQWGSAAK---LFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLN-NHQVSTVEPND 73

  Fly    75 KILLLEKDKLSSVKTMKWDSIKKVMFTIGGWEEDSSSFSRMVASPKKRDNFYSSMLEFMFRWGFD 139
            ::...|   |:|:|  |.:...|.:..:|||...:..|:.|||:...|..|.:|.|.|:...|||
  Rat    74 ELFYQE---LNSLK--KRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSALSFLRTHGFD 133

  Fly   140 GVQIDWRYPTLLGGHPDDRQNFVILLEELGLIFR-------KNQLILMVAV-LGRRDNRILESYN 196
            |:.:||.||...|....|::.|..|:::|...|:       |::|:|..|| .||  ..:...|.
  Rat   134 GLDLDWEYPGSRGSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGR--GHVDAGYE 196

  Fly   197 IPEIVNHSDFIHLMMHDEQDPYHLRLAYNAPLVGYEG--------SVTDSIMHWKRNGGAPEKLI 253
            :.:||...|||:||.:|....:.....:|:||...:|        :|..::..|.:.|....||:
  Rat   197 VDKIVQSLDFINLMAYDFHSSWDKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTPASKLM 261

  Fly   254 LGIPLFVRSFTM-DRNQSTVGSACKGPGRQTKQSHRPGFMTYNEWCVQQSKWSRMFDQLAKVPYA 317
            ||:|.:.||||: ..:.|.||:...|||.....:...|.:.|.|.|..:.| .|:.||  ||||.
  Rat   262 LGMPAYGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGK-QRIEDQ--KVPYV 323

  Fly   318 TRGDQWVSYENPRSIWAKMHLLQEHKLGGAMAWTIDVDDFRGR-CGE-QHGLLRVIFSALGDKNG 380
            ::|:|||.:::..|..||...:::..|||||.|.:|.|||:|. |.| |:.|:|.:...|...:|
  Rat   324 SQGNQWVGFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELSLSSG 388

  Fly   381 LTTEKPTTEASGLCPH---------------------DGFSRDGWDCRLYHECRDGERIYYECLE 424
             ....|..|..|  ||                     ||...:..:...::.|..|....:.|..
  Rat   389 -PPRSPEQEVPG--PHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSCPP 450

  Fly   425 GQYFDENQIVC 435
            |..|.::...|
  Rat   451 GLVFIDSCKCC 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 117/369 (32%)
Glyco_hydro_18 47..355 CDD:279094 103/325 (32%)
ChtBD2 394..438 CDD:214696 10/63 (16%)
Chit1NP_001073157.1 GH18_chitolectin_chitotriosidase 24..383 CDD:119351 117/369 (32%)
ChtBD2 416..463 CDD:214696 8/46 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350390
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 1 1.000 - - FOG0000107
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X91
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.850

Return to query results.
Submit another query.