DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht12 and lmd-4

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_504862.2 Gene:lmd-4 / 179121 WormBaseID:WBGene00017233 Length:2011 Species:Caenorhabditis elegans


Alignment Length:503 Identity:119/503 - (23%)
Similarity:200/503 - (39%) Gaps:124/503 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LGSYYYKGRSQFFEWHLDSRLCTHLVL--------GS---GIGVDGDSG---ELRITDKILLLEK 81
            :|.|...|..:..|..|  :..||::.        ||   |...:.|||   ..:...:.|.::|
 Worm  1482 VGYYTGWGDREITENQL--KKLTHVIFAFVAMYEDGSVKFGAVSEDDSGPQAAKKAERRFLNMKK 1544

  Fly    82 DKLSSVKTMKWDSIKKVMFTIGGWEEDSSSFSRMVASPKKRDNFYSSMLEFMFRWGFDGVQIDWR 146
                  |....:|..:|:|.:||| ::|..||.:.|...||..|..|:..|:.....|||.:||.
 Worm  1545 ------KARAANSGVRVLFAVGGW-DNSQYFSSVAADSGKRKKFVDSIASFVEDQKIDGVDLDWE 1602

  Fly   147 YPTLLGGHPDDRQNFVILLEELGLIF--------RKNQLILMVAVLGRRDNRILESYNIPEIVNH 203
            ||...|   .|.:|.|.|::|:...|        ||:..::.:|......| :.:.|::..|:.:
 Worm  1603 YPDSNG---KDAKNHVQLIKEIREKFSEMAKKKKRKDPYVITLASAAGEWN-LRKGYDLKGILKY 1663

  Fly   204 SDFIHLMMHDEQDPYHLRL-AYN---APLV-----GYEGSVTD--SIMHWKRNGGAPEKLILGIP 257
            :|||::|.:|....:..:. ||.   |||.     |:.|.:..  |:..:......|.:|.:|:|
 Worm  1664 ADFINVMTYDYYGAWESKWGAYTGTPAPLYFGSLKGFSGKLNADFSMKFYACKTEKPSQLNMGVP 1728

  Fly   258 LFVRSF-----TMDRNQSTVGSACKGPGRQTKQSHRPGFMTYNE-----WCVQQSKWSRMFDQLA 312
            .:.|.:     .:|::.:...:|....|:     :..|::.:..     |    :|.|..:.:..
 Worm  1729 FYGRYWKNVLGPIDKSDNMWRTAAPQNGK-----YEGGYVGWRNLAKEGW----NKGSASWHEKT 1784

  Fly   313 KVPYATR--GDQWVSYENPRSIWAKMHLLQEHKLGGAMAWTIDVDDFRGRCGEQHGLLRVIFSA- 374
            |.||...  ..:::.:||.||:..||....:..|||.|.|.:|:||      :...||.::.|| 
 Worm  1785 KTPYIMNNGAKKFLGFENERSLKEKMKYATDRNLGGLMIWALDLDD------DADTLLNLVSSAG 1843

  Fly   375 -----LGDK-----------NGLTTEKPTTEASGLC---------------PHD-GFSRDGWDCR 407
                 .|||           ...|.|....:..|.|               |.| |||    .|.
 Worm  1844 LCSGGKGDKVTYKCVPIDDVRWWTPENSDEKKQGQCGKSAPLINGFYPVCDPDDPGFS----CCG 1904

  Fly   408 LYHECRDGERIYYECLEGQYFDENQIVCRPAAEVKCDQNFVIWRPGMP 455
            ....|..|:         :|.|     |:.....:.|.:.:|.:|..|
 Worm  1905 AAGYCGSGK---------EYCD-----CKGCVNYRKDPDLIIKKPVKP 1938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 97/394 (25%)
Glyco_hydro_18 47..355 CDD:279094 87/352 (25%)
ChtBD2 394..438 CDD:214696 12/59 (20%)
lmd-4NP_504862.2 LysM 25..65 CDD:197609
LysM 79..120 CDD:197609
LysM 142..185 CDD:197609
LysM 209..250 CDD:197609
LysM 270..313 CDD:197609
LysM 334..377 CDD:197609
LysM 401..444 CDD:197609
LysM 469..509 CDD:197609
LysM 550..590 CDD:197609
LysM 635..678 CDD:197609
LysM 710..750 CDD:197609
LysM 760..802 CDD:197609
LysM 876..919 CDD:197609
Self-incomp_S1 1359..1433 CDD:283566
Glyco_18 1480..1825 CDD:214753 89/364 (24%)
GH18_chitinase-like 1481..1824 CDD:299167 89/363 (25%)
ChtBD1_GH18_2 1873..1924 CDD:211315 13/68 (19%)
ChtBD1_GH18_2 1951..2002 CDD:211315
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164350
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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