DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht12 and cht-3

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_501082.2 Gene:cht-3 / 177464 WormBaseID:WBGene00016084 Length:1067 Species:Caenorhabditis elegans


Alignment Length:454 Identity:87/454 - (19%)
Similarity:165/454 - (36%) Gaps:116/454 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 HLDSRLCTHLVLGSGIGVDGDSGELRITDKILLLEKDKLSSV--KTMKWDS-----IKKVMFTIG 103
            :|.|..|:|:|:        ....|.::||  ::|:||...:  |...|.|     ..:::.::|
 Worm   391 NLKSDYCSHIVV--------PYFALDLSDK--MIEEDKAEDLVKKIDDWRSKIVEVAPRLILSVG 445

  Fly   104 GWEEDSSSFSRMVASPKKRDNFYSSMLEFMFRWGFDGVQIDWRYPTLLGGHPDDRQNFVILLEEL 168
            . ::.|:.:..::.:...|......:::.:.....||::|.|....::...  |::|....:.: 
 Worm   446 S-KQASTIWQFLLGNDFHRKELAEGLVKAINSTNADGLEISWTSQPMVSDF--DKKNLKSFIND- 506

  Fly   169 GLIFRKNQLILMVAVLGRRDNRILESYNIPEIVNHSDFIHL---MMHDEQDPYHLRLAYNAPLVG 230
             ::......::.:.|...:.:...:.|:...:...:..|.|   .:|.:..|:   ..:.:||..
 Worm   507 -IVAADTAKMVEIVVATSQQSAYSDFYDYEHLNKTASLIVLHSHRLHSDSLPF---TGHPSPLRA 567

  Fly   231 YEGSVTDSIM-------HWKRNGGAPEKLILGIPLFVRSFTMDRNQSTVGSACKGPGRQTK---- 284
             ..|:|:..|       ||......|.||:|.:.....|.   ::.:.|.|:...|..|:.    
 Worm   568 -TSSMTNQKMSWESLLSHWVEKRVLPSKLVLSLSASTLSM---QSLADVRSSAATPFGQSAFVSM 628

  Fly   285 -QSHRPGFMTYNEWCVQQSKWSRMFDQL--AKVPYATRGDQWVSYENPRS-----IWAKMHLLQE 341
             :|.:....:..|.|......:.:...:  |:|||..|.||.|:|||.||     :||.|     
 Worm   629 LRSKKGDIHSQQEICESLKSGTGVTHWVDGAEVPYLRRYDQMVAYENTRSAHIKAVWASM----- 688

  Fly   342 HKLGGAMAWTIDVDDFRGRCGEQHGLLRVIFSALGDKNGLTTEKPTTEASGLCPHDGFSRDGWDC 406
            ..:||.....:..||....|..     |..|..|                     :..||     
 Worm   689 EGVGGLALHNMHQDDPSAVCDN-----RTAFPIL---------------------NALSR----- 722

  Fly   407 RLYHECRDGERIYYECLEGQYFDENQIVCRPAAEVKCDQ-------NFVIWRPGMPVYSYDNMP 463
                     .::...||:...|.            ||:|       ||.:.| ..||:..|.:|
 Worm   723 ---------AQVCQTCLKQHDFK------------KCEQHDFVVSCNFELKR-STPVFKTDIVP 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 71/357 (20%)
Glyco_hydro_18 47..355 CDD:279094 66/336 (20%)
ChtBD2 394..438 CDD:214696 5/43 (12%)
cht-3NP_501082.2 Glyco_18 51..334 CDD:214753
GH18_chitinase-like 51..>103 CDD:299167
Glyco_18 375..702 CDD:214753 66/337 (20%)
GH18_chitinase-like 387..723 CDD:299167 74/398 (19%)
Glyco_hydro_18 761..1043 CDD:279094 2/4 (50%)
GH18_chitinase-like <1018..1062 CDD:299167
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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