DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht12 and Chia

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_997469.1 Gene:Chia / 113901 RGDID:1303058 Length:473 Species:Rattus norvegicus


Alignment Length:493 Identity:130/493 - (26%)
Similarity:214/493 - (43%) Gaps:89/493 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 MIMIFLICGCI-------AKEYNVFCQYDLGSYYYKGRSQFFEWHLDSRLCTHLVLG-SGIGVDG 65
            |..:.|:.|.:       ...||:.|.:...:.|..|...|....::..|||||:.. :|:    
  Rat     1 MAKLILVTGLVLLLNVQLGSAYNLVCYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAGM---- 61

  Fly    66 DSGELRITDKILLLEKDKLSSVKTMKWDSIK---------------KVMFTIGGWEEDSSSFSRM 115
                             :.:.:.|::|:.:.               |.:..||||...::.|:.|
  Rat    62 -----------------QNNQITTIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTM 109

  Fly   116 VASPKKRDNFYSSMLEFMFRWGFDGVQIDWRYPTLLGGHPDDRQNFVILLEELGLIFRKNQL--- 177
            |::.:.|..|.:|:::|:.::||||:.:||.||...|..|.|:..|.:|::||...|.:..:   
  Rat   110 VSTSQNRQTFITSVIKFLRQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKELREAFEQEAIESN 174

  Fly   178 ---ILMVAVLGRRDNRILESYNIPEIVNHSDFIHLMMHDEQDPYHLRLAYNAPLVGYE-----GS 234
               :::.|.:....:.|...|.|||:..:.||||:|.:|....:......|:||  |:     ||
  Rat   175 RPRLMVTAAVAAGISNIQAGYEIPELSQYLDFIHVMTYDLHGSWDGYTGENSPL--YKLPTETGS 237

  Fly   235 ----VTDSIM-HWKRNGGAPEKLILGIPLFVRSFTMDRNQST-VGSACKGPGRQTKQSHRPGFMT 293
                ..|.:| :||.||...||||:|.|.:..::.:.....| :|:...|.|.....:.:.||..
  Rat   238 NAYLNVDYVMNYWKDNGAPAEKLIVGFPEYGHTYILSNPSDTGIGAPTSGNGPAGPYTRQAGFWA 302

  Fly   294 YNEWCV-QQSKWSRMFDQLAKVPYATRGDQWVSYENPRSIWAKMHLLQEHKLGGAMAWTIDVDDF 357
            |.|.|. .::..::.:|...:||||.:|::||.|:|.:|...|...|:::..||||.|.||:|||
  Rat   303 YYEICTFLRNGATQDWDAPQEVPYAYKGNEWVGYDNIKSFSVKAQWLKQNNFGGAMIWAIDLDDF 367

  Fly   358 RGRCGEQ--HGLLRVIFSALGDKNG------LTTEKPTT---------------EASGLC--PHD 397
            .|...:|  ..|...:..||.....      |.:|..||               |.||.|  ..|
  Rat   368 TGSFCDQGKFPLTSTLNKALDIPTAGCTAPDLPSEPVTTPPGSGSGGGSSGGGSEGSGFCAGKAD 432

  Fly   398 GFSRDGWDCRLYHECRDGERIYYECLEGQYFDENQIVC 435
            |......|...:..|.:|......|..|..||.:...|
  Rat   433 GLYPVADDRNAFWHCINGITYQQHCQAGLVFDTSCNCC 470

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 105/385 (27%)
Glyco_hydro_18 47..355 CDD:279094 95/341 (28%)
ChtBD2 394..438 CDD:214696 11/44 (25%)
ChiaNP_997469.1 GH18_chitolectin_chitotriosidase 24..387 CDD:119351 105/385 (27%)
Glyco_18 24..365 CDD:214753 99/363 (27%)