DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cht12 and chia.5

DIOPT Version :9

Sequence 1:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001103511.2 Gene:chia.5 / 100003900 ZFINID:ZDB-GENE-071004-113 Length:481 Species:Danio rerio


Alignment Length:501 Identity:135/501 - (26%)
Similarity:220/501 - (43%) Gaps:91/501 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTSFQYVFMIMIFLICGCIAKEYNVFCQYDLGSYYYKGRSQFFEWHLDSRLCTHLVLGSGIGVDG 65
            |:.|.::....:.|....:|.:  :.|.:...|.|.....::...::|..|||||:....|    
Zfish     1 MSRFIFIASFSLALCHFGLASQ--LICYFTNWSQYRPDVGKYMPSNVDPHLCTHLIYAFSI---- 59

  Fly    66 DSGELRITDKILLLEKDKLSSVKTMKW---------------DSIKKVMFTIGGWEEDSSSFSRM 115
                        :..::||:   |.:|               :|..|.:..:||||..|:.||.|
Zfish    60 ------------INNENKLT---TYEWNDETLYQSFNGLKQSNSNLKTLLAVGGWEFGSAQFSSM 109

  Fly   116 VASPKKRDNFYSSMLEFMFRWGFDGVQIDWRYPTLLGGHPDDRQNFVILLEELGLIFR------- 173
            |:.|:.|..|..|.:.|:...||||:.:||.||...|..|:|:|.|.:|.:||...::       
Zfish   110 VSMPQNRQTFIQSSITFLRTHGFDGLDLDWEYPGSRGSPPEDKQRFTLLCKELVEAYQAESAATG 174

  Fly   174 KNQLILMVAVLGRRDNRILES-YNIPEIVNHSDFIHLMMHDEQDPYHLRLAYNAPLVGYEGSV-- 235
            :.:|:|..||...:.  |::: |.|.||..:.|||::|.:|..........:|:||....|..  
Zfish   175 RPRLMLTAAVAAVKG--IIDAGYEIAEIAKYLDFINIMTYDFHGSQDNITGHNSPLYRDSGDTGD 237

  Fly   236 -----TDSIMHWKRNGGAP-EKLILGIPLFVRSFTMDRNQSTVGSACKGPGRQTKQSHRPGFMTY 294
                 ||..|::.|:.||| |||.:|...:.|:|.:....:.||:...|.......:...||.:|
Zfish   238 QIYYNTDFAMNYWRDQGAPVEKLRMGFAAYGRTFRLSSADNGVGAPASGAALAGTYTREAGFWSY 302

  Fly   295 NEWC--VQQSKWSRMFDQLAKVPYATRGDQWVSYENPRSIWAKMHLLQEHKLGGAMAWTIDVDDF 357
            .|.|  :|.:...::.||  ||||||:|.:||.:::..|...|:..|:|...|||..|::|:|||
Zfish   303 YEICTFLQGAIVQQIVDQ--KVPYATKGQEWVGFDDQESYETKVDYLKEKGFGGAFVWSLDLDDF 365

  Fly   358 RGR-CGE--------QHGLLRVIFSALGDKNGLTTEK---PTTEASGLCPH-------------- 396
            .|: ||:        .|.||.:..:........||:|   .:|.||...||              
Zfish   366 SGQFCGQGKYPLIGHLHTLLNISNTDFPSLPPSTTDKASGTSTTASAAVPHTTIPPVVPTAPSGS 430

  Fly   397 -------DGFSRDGWDCRLYHECRDGERIYYECLEGQYFDENQIVC 435
                   :|...:..|.:.:.:|.:|......|.....||.:...|
Zfish   431 DFCASRSEGIYANPADPKTFIQCANGRTFIQNCPATTVFDPDCTCC 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 115/391 (29%)
Glyco_hydro_18 47..355 CDD:279094 103/340 (30%)
ChtBD2 394..438 CDD:214696 10/63 (16%)
chia.5NP_001103511.2 Glyco_18 22..363 CDD:214753 106/365 (29%)
GH18_chitolectin_chitotriosidase 23..381 CDD:119351 112/380 (29%)
CBM_14 433..479 CDD:279884 8/44 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.