DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30289 and psh

DIOPT Version :10

Sequence 1:NP_726081.1 Gene:CG30289 / 246532 FlyBaseID:FBgn0050289 Length:316 Species:Drosophila melanogaster
Sequence 2:NP_573297.1 Gene:psh / 32832 FlyBaseID:FBgn0030926 Length:394 Species:Drosophila melanogaster


Alignment Length:225 Identity:76/225 - (33%)
Similarity:109/225 - (48%) Gaps:30/225 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 CGGSLIARQFVLTAAHCVSFE---DLYVRLGDYETLDPMPYCLNNHCIPKFYNISVDMKIVHENY 126
            |||||||.:|||||||||:.:   ..:||||.....:|      :|   .:.:|.:....:|..|
  Fly   172 CGGSLIASRFVLTAAHCVNTDANTPAFVRLGAVNIENP------DH---SYQDIVIRSVKIHPQY 227

  Fly   127 NGITLQNDIALLRMSEAVEYSDYVRPICLLV-GEQMQSIPMFTVTGWG--ETEYGQFSRILLNAT 188
            .| ...||||:|.:...|..:|.:||.||.. .....|...|.|.|||  .......|:|||.|.
  Fly   228 VG-NKYNDIAILELERDVVETDNIRPACLHTDATDPPSNSKFFVAGWGVLNVTTRARSKILLRAG 291

  Fly   189 LYNMDISYCNIKFNKQADR----------SQICAGSH--TSNTCKGDSGGPLSSKFHYGNRLLSF 241
            |..:.:..|||.:.:|...          |.:||...  .::.|||||||||..:.:..:.:.:.
  Fly   292 LELVPLDQCNISYAEQPGSIRLLKQGVIDSLLCAIDQKLIADACKGDSGGPLIHELNVEDGMYTI 356

  Fly   242 QYGLVSYGSERCAANVAGVYTNVSYHREWI 271
            . |::|.|. .||....|:||.||.:.::|
  Fly   357 M-GVISSGF-GCATVTPGLYTRVSSYLDFI 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30289NP_726081.1 Tryp_SPc 42..271 CDD:238113 75/223 (34%)
pshNP_573297.1 CLIP 30..79 CDD:197829
Tryp_SPc 144..387 CDD:238113 76/225 (34%)
Blue background indicates that the domain is not in the aligned region.

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