DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30288 and Gzma

DIOPT Version :10

Sequence 1:NP_001097398.1 Gene:CG30288 / 246531 FlyBaseID:FBgn0050288 Length:282 Species:Drosophila melanogaster
Sequence 2:NP_703198.2 Gene:Gzma / 266708 RGDID:628640 Length:261 Species:Rattus norvegicus


Alignment Length:259 Identity:73/259 - (28%)
Similarity:105/259 - (40%) Gaps:63/259 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 RIDGGRDAGMESNPWMVRVMISGKAVCGGSLITARFVLTAEHCISPMYMNVRLGEYDTR------ 100
            ||.||......|.|:||.:.:...:||.|:||...:||||.|||......|.||.:..:      
  Rat    28 RIIGGDTVVPHSRPYMVLLKLKPDSVCAGALIAKNWVLTAAHCIPGKKSEVILGAHSIKKEPEQQ 92

  Fly   101 ---------HPIFDCDDFVCTPRAYNVDVDRKIVHSNPGYDIGLLRMQRSVIFSNYVRPICLILG 156
                     :|.||                   .|::.| |:.|||:::....:..|  ..|.|.
  Rat    93 ILSVKKAYPYPCFD-------------------KHTHEG-DLQLLRLKKKATLNKNV--AILHLP 135

  Fly   157 KTLGGNPLSILRFNFTGWGT-NSDGEEQDRLQTATLQQLPQWSCE-------RPGRPLDISYICA 213
            |. |.:.....|.:..|||. ::.....|.|:...:..:.:..|.       .|  .:.::.|||
  Rat   136 KK-GDDVKPGTRCHVAGWGRFHNKSPPSDTLREVNITVIDRKICNDEKHYNFNP--VIGLNMICA 197

  Fly   214 GSYI--SDSCKGDSGGPLSAIRTFEGQGRVFQFGVASQGLRLC---SGLGIYTNVT--HFTDWI 270
            |:..  .|||.|||||||.....|.|   :..||:..    .|   .|.||||.::  |. |||
  Rat   198 GNLRGGKDSCYGDSGGPLLCEGIFRG---ITAFGLEG----TCGDPKGPGIYTLLSDKHL-DWI 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30288NP_001097398.1 Tryp_SPc 45..270 CDD:238113 69/254 (27%)
GzmaNP_703198.2 Tryp_SPc 29..256 CDD:238113 72/258 (28%)

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