DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30287 and hgfa

DIOPT Version :9

Sequence 1:NP_726083.1 Gene:CG30287 / 246530 FlyBaseID:FBgn0050287 Length:284 Species:Drosophila melanogaster
Sequence 2:XP_005164799.1 Gene:hgfa / 493781 ZFINID:ZDB-GENE-041014-2 Length:712 Species:Danio rerio


Alignment Length:280 Identity:63/280 - (22%)
Similarity:106/280 - (37%) Gaps:61/280 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KVQGQPHLLDPQCVTARSEPGLYRVINGKPADLFSNPWMVIIIERGMMK-CGGSLITPRYVLTAA 81
            ::.|.|   .|.|...::.    |::.|.......:...|:.|::|... ||||||...:|||..
Zfish   460 QMSGGP---KPSCFIHKTT----RIVGGMRVQRAEDGSWVVSIQKGNRHWCGGSLIREEWVLTDQ 517

  Fly    82 HCKS---ETKSQLTVRLGDYDVN-----QAVDCSSYGCIPRPREINVTRTYVPSHYTNFRKNDIA 138
            .|.|   ...|:.||::|...:|     ||:..:...|.|                   ..:::|
Zfish   518 QCFSTCVPDLSEYTVQVGLLHLNASAGTQALRIAHVVCGP-------------------EGSNLA 563

  Fly   139 LLRLETTVQYGDNIRSICLLMGDYTWSSNILKNLVKFNTTGWGRTESRINSPVLQQASLTHHHLS 203
            ||:|.|.....:::|::.|.:.....:...|..:.     |||.|:...:...|:...|      
Zfish   564 LLKLTTPAPLSEHVRTVQLPVAGCAVAEGTLCLMY-----GWGDTKGTGHEGSLKMVGL------ 617

  Fly   204 YCAQVFGKQLDKSH----------ICVASSTG-STCQGDSGGPLTARVRIGSERRVILFGVVSYG 257
              ..|..|:..:||          ||...... ..|:.|.||||..:.  |..:.::...:...|
Zfish   618 --PIVSNKRCSQSHNGILPITETKICAGGKRDQGVCEKDYGGPLVCQE--GESKVIVGVSINGRG 678

  Fly   258 AVHCFGPTVYTNVIHFANWI 277
            ......|.|:.||..::.||
Zfish   679 CAVARRPAVFVNVAFYSEWI 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30287NP_726083.1 Tryp_SPc 41..277 CDD:214473 57/255 (22%)
Tryp_SPc 42..280 CDD:238113 58/256 (23%)
hgfaXP_005164799.1 PAN_AP_HGF <50..107 CDD:238532
KR 111..192 CDD:238056
KR 195..275 CDD:214527
KR 287..367 CDD:214527
KR 374..451 CDD:214527
Tryp_SPc 476..698 CDD:214473 57/255 (22%)
Tryp_SPc 477..701 CDD:238113 58/256 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575858
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.