DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30287 and svh-1

DIOPT Version :9

Sequence 1:NP_726083.1 Gene:CG30287 / 246530 FlyBaseID:FBgn0050287 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:273 Identity:68/273 - (24%)
Similarity:119/273 - (43%) Gaps:46/273 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 QC------VTAR--SEPGLYRVINGKPADLFSNPWMVIIIERGMM--KCGGSLITPRYVLTAAHC 83
            ||      |.||  ::..:.||:.|......:.||...:..:...  .||.|::...:::|||||
 Worm   692 QCGLRYVEVNARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHC 756

  Fly    84 --KSETKSQLTVRLGDYDVNQAVDCSSYGCIPRPREINVTRTYVPSHYTNFRKNDIALLRLE-TT 145
              :.|..|...|.:||:|.||...        ..:...:.|.:....|.:...:|||:|.:. ..
 Worm   757 FEEDERVSSYEVVVGDWDNNQTDG--------NEQIFYLQRIHFYPLYKDIFSHDIAILEIPYPG 813

  Fly   146 VQYGDNIRSICLLMGDYTWSSNILKNLVKFNTTGWG----RTESRINS---PVLQQASLTHHHLS 203
            :::.:..:.|||...|:.::..  :..|   .:|||    |...|:.:   |::.:....:    
 Worm   814 IEFNEYAQPICLPSKDFVYTPG--RQCV---VSGWGSMGLRYAERLQAALIPIINRFDCVN---- 869

  Fly   204 YCAQVFGKQLDKSHICVASSTG--STCQGDSGGPLTARVRIGSERRVILFGVVSY--GAVHCFGP 264
             .:|:: ..:.:|..|.....|  .:||||||||...|...|:   .:|.||:|:  |......|
 Worm   870 -SSQIY-SSMSRSAFCAGYLEGGIDSCQGDSGGPFACRREDGA---FVLAGVISWGDGCAQKKQP 929

  Fly   265 TVYTNVIHFANWI 277
            .:||.|..:.:||
 Worm   930 GIYTMVAPYLSWI 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30287NP_726083.1 Tryp_SPc 41..277 CDD:214473 61/251 (24%)
Tryp_SPc 42..280 CDD:238113 62/252 (25%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SRCR_2 599..681 CDD:382996
Tryp_SPc 713..945 CDD:238113 62/252 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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