DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30286 and scaf

DIOPT Version :10

Sequence 1:NP_726082.3 Gene:CG30286 / 246529 FlyBaseID:FBgn0050286 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster


Alignment Length:261 Identity:59/261 - (22%)
Similarity:99/261 - (37%) Gaps:73/261 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 AHISESPWMAYL--HKSGELVCGGTLVNHRFILTAAHCIR--EDENLTVRLGEFN---------- 91
            |:.:|.||.|.:  ..|..|:|||.::..:|:|::|.|:.  ...::.|:.||:.          
  Fly   429 ANFAEIPWQAMILRESSKTLICGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPF 493

  Fly    92 SLTSIDCNGSDCLPPSEDFEIDVAFRHGGYSRTNRIHDIGLLRLAKSVEYKVHIKPICLITNTTL 156
            .||.:.             .:||   |..|..:...||:.::||.:.:|:..||:|||:   :..
  Fly   494 QLTGVK-------------TVDV---HPDYDPSTNSHDLAIIRLERRLEFASHIQPICI---SDE 539

  Fly   157 QPKIERLHRLVATGWGRS-----PSEAANHILKSIRVTRV-----NWGVCSKTYWVDRRRDQICV 211
            .||..  .:...:|||:.     ...|..|:..::...|.     :..|||.|.:          
  Fly   540 DPKDS--EQCFTSGWGKQALSIHEEGALMHVTDTLPQARSECSADSSSVCSATKF---------- 592

  Fly   212 SHESGVSCSGDSGGPM----GQAIRLDGRVLFVQVGIVSYGNAECLSPSVFTNVMEHIDWIMAAL 272
                 .||..|.|..:    |.::||.|         :..|...|............|.||..|.
  Fly   593 -----DSCQFDVGSALACGSGSSVRLKG---------IFAGENSCGEGQTVRFAKPDIKWINTAF 643

  Fly   273 S 273
            :
  Fly   644 A 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30286NP_726082.3 Tryp_SPc 39..269 CDD:238113 57/255 (22%)
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 53/231 (23%)
Blue background indicates that the domain is not in the aligned region.

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