DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30281 and Tnr

DIOPT Version :9

Sequence 1:NP_726164.1 Gene:CG30281 / 246525 FlyBaseID:FBgn0050281 Length:291 Species:Drosophila melanogaster
Sequence 2:NP_037177.2 Gene:Tnr / 25567 RGDID:3886 Length:1358 Species:Rattus norvegicus


Alignment Length:278 Identity:103/278 - (37%)
Similarity:138/278 - (49%) Gaps:39/278 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LVYKKAESMVSSL-------KIRLEELK---------QSYKEITEE--------RGSHETINPSS 67
            |.||..:.....|       .||||.|.         |:.:|.|..        .|.....:|..
  Rat  1073 LTYKSTDGSRKELIVDAEDTWIRLEGLSENTDYTVLLQAAQEATRSSLTSTIFTTGGRVFSHPQD 1137

  Fly    68 C---LAAGINSNGIHVIEVPG--LEPFPVYCDTRLAGSGWTVIQRRQDGSENFYRCWEEYSQGFG 127
            |   |..|...:|::.|.:.|  .....||||....|.||.|.||||:|..:|:|.|.:|..|||
  Rat  1138 CAQHLMNGDTLSGVYTIFLNGELSHKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFG 1202

  Fly   128 ELSGEFFMGLEKLHFLTTAEPYELFVYMEDFNGVVHDARYEDFAIGNASASYALSVLGKYSGDAG 192
            .|..||::||:.:|.:|....|||.|.|.|....|. |.|:.||:.::.:.|.|.: |.|:|.||
  Rat  1203 NLEDEFWLGLDNIHRITAQGRYELRVDMRDGQEAVF-AYYDKFAVEDSRSLYKLRI-GGYNGTAG 1265

  Fly   193 DSLRYHKGMPFSTFDHDD--TGHGCARIYVGAWWYDQCQRSNLNGQYLEGGRFEPKMSGRGITWM 255
            |||.||:|.||||.|.|:  ....||..|.|||||..|.|:||||:|.|      ....:||.|.
  Rat  1266 DSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGE------SRHSQGINWY 1324

  Fly   256 SWRGYDYGYKFVQMMIRP 273
            .|:|:::...||:|.:||
  Rat  1325 HWKGHEFSIPFVEMKMRP 1342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30281NP_726164.1 FReD 63..274 CDD:238040 90/218 (41%)
TnrNP_037177.2 exchanger_TraA <190..>328 CDD:411343
EGF_Tenascin 203..231 CDD:376143
fn3 328..398 CDD:394996
fn3 416..496 CDD:394996
fn3 507..586 CDD:394996
FN3 595..679 CDD:238020
fn3 687..766 CDD:394996
fn3 776..855 CDD:394996
fn3 865..944 CDD:394996
fn3 954..1026 CDD:394996
FN3 1042..1127 CDD:238020 12/53 (23%)
FReD 1134..1342 CDD:238040 88/215 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm12326
orthoMCL 1 0.900 - - OOG6_100073
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.710

Return to query results.
Submit another query.