DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30278 and Slco1a4

DIOPT Version :9

Sequence 1:NP_001286710.1 Gene:CG30278 / 246523 FlyBaseID:FBgn0050278 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_571981.1 Gene:Slco1a4 / 170698 RGDID:621389 Length:661 Species:Rattus norvegicus


Alignment Length:92 Identity:18/92 - (19%)
Similarity:33/92 - (35%) Gaps:22/92 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 YKHSVILDNNTIVGR---CFPMKFQLRRTKKNCLDCGNE---LYYRYPITNNSDLLLIKNCCEVE 188
            |::..||..:.:...   |...:.|.....::..:|..|   |.:.|.:..|    :|:...|..
  Rat   113 YEYETILPTSNVSSNSFFCVENRSQTLNPTQDPSECVKEMKSLMWIYVLVGN----IIRGIGETP 173

  Fly   189 VYPAKKVENMNNVRVTKISGVKKFANS 215
            :.|            ..||.::.||.|
  Rat   174 IMP------------LGISYIEDFAKS 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30278NP_001286710.1 None
Slco1a4NP_571981.1 oat 1..623 CDD:273279 18/92 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3626
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.