DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30184 and smg1

DIOPT Version :9

Sequence 1:NP_726341.1 Gene:CG30184 / 246506 FlyBaseID:FBgn0050184 Length:223 Species:Drosophila melanogaster
Sequence 2:XP_009297728.1 Gene:smg1 / 569810 ZFINID:ZDB-GENE-061013-767 Length:3641 Species:Danio rerio


Alignment Length:64 Identity:16/64 - (25%)
Similarity:25/64 - (39%) Gaps:23/64 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 YAGAIYLMHCTFALDLMFSHSRSRANQKMHPQRSKRPLQ-----LYFISRGAEAYLSRFWFFRR 178
            :|||:|                ....|:...::|||.::     ..|.||.||..::  ||..|
Zfish  2412 FAGAVY----------------GGGGQQAENKQSKREMERDITRSLFSSRVAEIKVN--WFKNR 2457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30184NP_726341.1 None
smg1XP_009297728.1 HEAT repeat 143..173 CDD:293787
HEAT repeat 183..216 CDD:293787
HEAT repeat 223..254 CDD:293787
SMG1 622..1231 CDD:292413
PIKKc_SMG1 2100..2406 CDD:270714
FATC 3611..3640 CDD:280430
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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