DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and Fhl2

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_113865.1 Gene:Fhl2 / 63839 RGDID:61963 Length:279 Species:Rattus norvegicus


Alignment Length:178 Identity:53/178 - (29%)
Similarity:82/178 - (46%) Gaps:6/178 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ASICCRCNEKIWP--RAVCSLGKTYHPHHFTCKECGLVVDPKLFFAVDDDVVCSECYLDKHAARC 65
            :|.|..|.:.|.|  |.:...|.::|...|||:.|...:..|.|...::...|..||..::|.:|
  Rat    98 SSKCQECKKTIMPGTRKMEYKGSSWHETCFTCQRCQQPIGTKSFIPKENQNFCVPCYEKQYALQC 162

  Fly    66 SACRTPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKP 130
            ..|:.||...||...::.||.:||.|.:|.|.|....|...:.:.:|...|.:|::.:||||..|
  Rat   163 VQCKKPITTGGVTYRDQPWHRECFVCTACKKQLSGQRFTARDEFPYCLTCFCDLYAKKCAGCTNP 227

  Fly   131 ID----RRAVVALSTKWHAKCFKCHHCRKRISAREFWIENGQPICAAC 174
            |.    .:.:.....:||..||.|..|...:..|.|..|....:|..|
  Rat   228 ISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 16/56 (29%)
LIM 65..116 CDD:259829 16/50 (32%)
LIM 124..171 CDD:413332 15/50 (30%)
Fhl2NP_113865.1 LIM <5..33 CDD:413332
LIM 36..97 CDD:413332
LIM2_FHL2 101..157 CDD:188810 16/55 (29%)
LIM 162..218 CDD:413332 18/55 (33%)
LIM4_FHL2 221..278 CDD:188817 17/55 (31%)
Blue background indicates that the domain is not in the aligned region.

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