DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and pdlim7

DIOPT Version :9

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_001025639.1 Gene:pdlim7 / 595027 XenbaseID:XB-GENE-5860425 Length:191 Species:Xenopus tropicalis


Alignment Length:10 Identity:4/10 - (40%)
Similarity:5/10 - (50%) Gaps:0/10 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 RKWHEKCFRC 91
            |.||.:...|
 Frog   176 RDWHHERSAC 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:295319
LIM 65..116 CDD:259829 4/10 (40%)
LIM 124..171 CDD:295319
pdlim7NP_001025639.1 PDZ_signaling 3..81 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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