DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and Pdlim5

DIOPT Version :9

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:XP_006501801.1 Gene:Pdlim5 / 56376 MGIID:1927489 Length:734 Species:Mus musculus


Alignment Length:176 Identity:53/176 - (30%)
Similarity:82/176 - (46%) Gaps:16/176 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ICCRCNEKIWPRAVCSLGKTYHPHHFTCKEC-------GLVVDPKLFFAVDDDVVCSECYLDKHA 62
            :|..||:.|....:.:|||::||..|.|..|       |.|.:....:       |..||....|
Mouse   557 MCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALY-------CELCYEKFFA 614

  Fly    63 ARCSACRTPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGC 127
            ..|..|:..||...:.|.::.||..||.||:|.|.:.:..|...:|..:|:..:..||.:.|.||
Mouse   615 PECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGC 679

  Fly   128 EKPIDR--RAVVALSTKWHAKCFKCHHCRKRISAREFWIENGQPIC 171
            |.||:.  ..:.||...||..||.|..|.:.:..:.|:.:..:|:|
Mouse   680 EFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLC 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:295319 17/61 (28%)
LIM 65..116 CDD:259829 16/50 (32%)
LIM 124..171 CDD:295319 16/48 (33%)
Pdlim5XP_006501801.1 PDZ_signaling 10..82 CDD:238492
PHA03307 150..>540 CDD:223039
DUF4749 214..315 CDD:374237
LIM1_ENH 558..609 CDD:188837 15/57 (26%)
LIM2_ENH 617..668 CDD:188841 16/50 (32%)
LIM3_ENH 676..730 CDD:188843 17/50 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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