DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and lpxn

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:XP_689239.4 Gene:lpxn / 560743 ZFINID:ZDB-GENE-081105-159 Length:405 Species:Danio rerio


Alignment Length:169 Identity:55/169 - (32%)
Similarity:80/169 - (47%) Gaps:0/169 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CCRCNEKIWPRAVCSLGKTYHPHHFTCKECGLVVDPKLFFAVDDDVVCSECYLDKHAARCSACRT 70
            |..|...|....:.::.:|:||.||.|..||.:..|:.:...|....||..:....|.:||.|..
Zfish   231 CAYCKGPITQNILTAMDQTWHPEHFFCCHCGDLFGPEGYLERDGKPYCSRDFYCLFAPKCSGCGE 295

  Fly    71 PILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKPIDRRA 135
            |:.|..::||...||..||.|..|.|......|.|:||...|..|:.....:.|..|.|||..|.
Zfish   296 PVKENYLSAANGTWHPDCFVCSDCLKPFTDGCFLELNGRPLCSLHYHSRQGTLCGTCGKPIAGRC 360

  Fly   136 VVALSTKWHAKCFKCHHCRKRISAREFWIENGQPICAAC 174
            :.||..|:|.:.|.|..|.:::|...|..:.|:|.|:.|
Zfish   361 IAALDRKFHPEHFVCAFCLRQLSQGVFKEQAGKPYCSVC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 15/54 (28%)
LIM 65..116 CDD:259829 19/50 (38%)
LIM 124..171 CDD:413332 17/46 (37%)
lpxnXP_689239.4 LIM1_Paxillin_like 172..224 CDD:259830
LIM2_Leupaxin 231..282 CDD:188792 15/50 (30%)
LIM3_Leupaxin 290..342 CDD:188794 20/51 (39%)
LIM4_Leupaxin 349..400 CDD:188796 19/51 (37%)
Blue background indicates that the domain is not in the aligned region.

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