DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and pdlim1

DIOPT Version :9

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_001017870.1 Gene:pdlim1 / 550568 ZFINID:ZDB-GENE-030131-5227 Length:322 Species:Danio rerio


Alignment Length:59 Identity:19/59 - (32%)
Similarity:28/59 - (47%) Gaps:5/59 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SICCRCNEKIWPRAVCSLGKTYHPHHFTCKECGLVVDPKLFFAVDDDVVCSECYLDKHA 62
            |:|.:|...|....|....|..||..:.|.:||:.:..|..|.|:|.:.|     :|||
Zfish   251 SLCDKCGSGIVGMIVKLRDKFRHPECYVCTDCGINLKQKGHFFVEDQIYC-----EKHA 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:295319 15/54 (28%)
LIM 65..116 CDD:259829
LIM 124..171 CDD:295319
pdlim1NP_001017870.1 PDZ_signaling 2..80 CDD:238492
DUF4749 133..223 CDD:292558
LIM_CLP36 253..304 CDD:188832 16/55 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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