DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and Lims1

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:XP_017457250.1 Gene:Lims1 / 499443 RGDID:1560732 Length:407 Species:Rattus norvegicus


Alignment Length:178 Identity:52/178 - (29%)
Similarity:84/178 - (47%) Gaps:6/178 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ICCRCNEKIWPRAVCSLGKTYHPHHFTCKECG--LVVDPKLFFAVDDDVVCSECYLDKHAARCSA 67
            ||.:|:..|..:.:......|||.||.|..||  |..|.:   .:..::.|..|:.......|.|
  Rat   205 ICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR---ELKGELYCLPCHDKMGVPICGA 266

  Fly    68 CRTPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKPID 132
            ||.||..|.|.|..::||.:.|.|..|.|..:....:|..|..:|:.|:.:||...|..|.:.|:
  Rat   267 CRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIE 331

  Fly   133 RRAVVALSTKWHAKCFKCHHCRKRISAREFWIE-NGQPICAACQTVVP 179
            ...|.||:..|...||.|..|..:::.::.::. :.:|:|..|...:|
  Rat   332 GDVVSALNKAWCVSCFACSTCNTKLTLKDKFVAIDLKPVCKYCYEKMP 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 15/56 (27%)
LIM 65..116 CDD:259829 18/50 (36%)
LIM 124..171 CDD:413332 12/47 (26%)
Lims1XP_017457250.1 LIM1_PINCH 81..139 CDD:188717
LIM2_PINCH 142..193 CDD:188718
LIM3_PINCH 206..256 CDD:188719 14/52 (27%)
LIM4_PINCH 262..315 CDD:188720 18/52 (35%)
LIM5_PINCH 323..376 CDD:188721 14/52 (27%)
Blue background indicates that the domain is not in the aligned region.

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