DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and pdlim5a

DIOPT Version :9

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:XP_017211548.1 Gene:pdlim5a / 436927 ZFINID:ZDB-GENE-040718-401 Length:557 Species:Danio rerio


Alignment Length:169 Identity:53/169 - (31%)
Similarity:84/169 - (49%) Gaps:2/169 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ICCRCNEKIWPRAVCSLGKTYHPHHFTCKECGLVVDPKLFFAVDDDVVCSECYLDKHAARCSACR 69
            :|..|:..|....:.::||::||..|||..|.:.:....|......|.|..||.:..|..||.|.
Zfish   380 MCAHCDMVIRGPFLVAMGKSWHPEEFTCAHCSVSLSELGFVEEQGSVYCQHCYEEFFAPTCSRCH 444

  Fly    70 TPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKPIDR- 133
            ..||...:.|.::.||..||.|.||.:.:.:.:|...:|..:|:..|..||.:.|.||:.||:. 
Zfish   445 HKILGEVINALKQTWHVYCFLCASCQQPIRNDTFHLEDGEPYCERDFYSLFGTGCRGCDFPIEAG 509

  Fly   134 -RAVVALSTKWHAKCFKCHHCRKRISAREFWIENGQPIC 171
             :.:.||...||..||.|..|...:..:.|:.:.|:|:|
Zfish   510 DKFLEALGGTWHDTCFVCTVCSVSLEGQTFFSKKGKPLC 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:295319 16/54 (30%)
LIM 65..116 CDD:259829 16/50 (32%)
LIM 124..171 CDD:295319 16/48 (33%)
pdlim5aXP_017211548.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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