DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and LIMS1

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_001358423.1 Gene:LIMS1 / 3987 HGNCID:6616 Length:398 Species:Homo sapiens


Alignment Length:178 Identity:53/178 - (29%)
Similarity:85/178 - (47%) Gaps:6/178 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ICCRCNEKIWPRAVCSLGKTYHPHHFTCKECG--LVVDPKLFFAVDDDVVCSECYLDKHAARCSA 67
            ||.:|:..|..:.:......|||.||.|..||  |..|.:   .:..::.|..|:.......|.|
Human   196 ICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR---ELKGELYCLPCHDKMGVPICGA 257

  Fly    68 CRTPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKPID 132
            ||.||..|.|.|..::||.:.|.|..|.|..:....:|..|..:|:.|:.:||...|..|.:.|:
Human   258 CRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIE 322

  Fly   133 RRAVVALSTKWHAKCFKCHHCRKRISAREFWIE-NGQPICAACQTVVP 179
            ...|.||:..|...||.|..|..:::.::.::| :.:|:|..|...:|
Human   323 GDVVSALNKAWCVNCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMP 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 15/56 (27%)
LIM 65..116 CDD:259829 18/50 (36%)
LIM 124..171 CDD:413332 13/47 (28%)
LIMS1NP_001358423.1 LIM1_PINCH 72..130 CDD:188717
LIM2_PINCH 133..184 CDD:188718
LIM3_PINCH 197..247 CDD:188719 14/52 (27%)
LIM4_PINCH 253..306 CDD:188720 18/52 (35%)
LIM5_PINCH 314..367 CDD:188721 15/52 (29%)
Blue background indicates that the domain is not in the aligned region.

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