DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and pdlim7

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_957134.2 Gene:pdlim7 / 393813 ZFINID:ZDB-GENE-040426-2092 Length:427 Species:Danio rerio


Alignment Length:169 Identity:49/169 - (28%)
Similarity:92/169 - (54%) Gaps:2/169 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ICCRCNEKIWPRAVCSLGKTYHPHHFTCKECGLVVDPKLFFAVDDDVVCSECYLDKHAARCSACR 69
            :|..|::.|..|.|.:||:::||..|.|.:|..::|...||.....:.||:||.::::..|:.|:
Zfish   251 LCAACSKIIRGRYVVALGRSWHPEEFMCCQCKRLLDEGGFFEEKGSIYCSKCYDNRYSPNCAKCK 315

  Fly    70 TPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKPIDR- 133
            ..|....:.|.:..:|.:||.|.:|...:.:.:|:...|..:|:..:.::|.::|.||:..||. 
Zfish   316 KIITGEIMHALKMTYHVQCFLCAACKLPIRNQAFYMEEGEPYCERDYEKMFGTKCHGCDFKIDAG 380

  Fly   134 -RAVVALSTKWHAKCFKCHHCRKRISAREFWIENGQPIC 171
             |.:.||...||..||.|..|:..:..:.|:.:..:|:|
Zfish   381 DRFLEALGYSWHDTCFVCAICQINLEGKTFYSKKDKPLC 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 19/54 (35%)
LIM 65..116 CDD:259829 12/50 (24%)
LIM 124..171 CDD:413332 16/48 (33%)
pdlim7NP_957134.2 PDZ_PDLIM-like 14..91 CDD:467235
DUF5585 <33..>250 CDD:465521
LIM1_Enigma 252..303 CDD:188836 17/50 (34%)
LIM2_Enigma 311..362 CDD:188840 12/50 (24%)
LIM3_Enigma 370..424 CDD:188842 17/50 (34%)
Blue background indicates that the domain is not in the aligned region.

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