DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and Pdlim4

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_062290.2 Gene:Pdlim4 / 30794 MGIID:1353470 Length:330 Species:Mus musculus


Alignment Length:57 Identity:19/57 - (33%)
Similarity:28/57 - (49%) Gaps:5/57 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CCRCNEKIWPRAVCSLGKTYHPHHFTCKECGLVVDPKLFFAVDDDVVCSECYLDKHA 62
            |.||...|....|.:..|.|||..|.|.:|||.:..:.:|.:|:.:.|     :.||
Mouse   255 CTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYC-----ENHA 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 17/54 (31%)
LIM 65..116 CDD:259829
LIM 124..171 CDD:413332
Pdlim4NP_062290.2 PDZ_PDLIM-like 4..82 CDD:467235
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..153
DUF4749 134..230 CDD:464948
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..242
LIM_RIL 255..307 CDD:188835 19/57 (33%)
Blue background indicates that the domain is not in the aligned region.

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