DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30178 and Fhl1

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:XP_006257733.1 Gene:Fhl1 / 25177 RGDID:2615 Length:339 Species:Rattus norvegicus


Alignment Length:199 Identity:49/199 - (24%)
Similarity:82/199 - (41%) Gaps:16/199 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ASICCRCNEKIWPRA--VCSLGKTYHPHHFTCKECGLVVDPKLFFAVDDDVVCSECYLDKHAARC 65
            |:.|..|.:.|...|  |....:.:|...|.|.:|...:..:.|.:.|..::|::|...:.:.||
  Rat    53 ANTCVECRKPISADAKEVHYKNRYWHDTCFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRC 117

  Fly    66 SACRTPIL--ERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCE 128
            ..|...|:  ::.|......||:.||.|.:|.:.:.:.|||......:|.......|:..|..|.
  Rat   118 KGCFKAIVAGDQNVEYKGTIWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCN 182

  Fly   129 KPIDRRAVVALSTKWHAKCFKCHHCRKRISAREFWIENGQ------------PICAACQTVVPSP 181
            |.|....:......|||:||.|..|.|:::.:.|.....|            ..||.|:..:...
  Rat   183 KAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGK 247

  Fly   182 RNLS 185
            |.:|
  Rat   248 RTVS 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 13/56 (23%)
LIM 65..116 CDD:259829 14/52 (27%)
LIM 124..171 CDD:413332 14/58 (24%)
Fhl1XP_006257733.1 LIM <21..49 CDD:413332
LIM1_FHL1 56..109 CDD:188730 12/52 (23%)
LIM2_FHL1 117..174 CDD:188808 14/56 (25%)
LIM3_FHL1 178..230 CDD:188813 14/51 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.