DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and Lims2

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_659111.1 Gene:Lims2 / 225341 MGIID:2385067 Length:341 Species:Mus musculus


Alignment Length:178 Identity:55/178 - (30%)
Similarity:83/178 - (46%) Gaps:6/178 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ICCRCNEKIWPRAVCSLGKTYHPHHFTCKECG--LVVDPKLFFAVDDDVVCSECYLDKHAARCSA 67
            ||.||:..|..:.:......|||.||:|..||  |..|.:   .:..::.|..|:.......|.|
Mouse   139 ICQRCHLAIDEQPLMFKNDPYHPDHFSCSNCGKELTSDAR---ELKGELYCLPCHDKMGIPICGA 200

  Fly    68 CRTPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKPID 132
            ||.||..|.|.|..::||.:.|.|..|.|..:....:|..|..:|:.|:.:||...|..|...|:
Mouse   201 CRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIE 265

  Fly   133 RRAVVALSTKWHAKCFKCHHCRKRISAREFWIE-NGQPICAACQTVVP 179
            ...|.|||..|...||.|..|..:::.:..::| :.:|:|..|....|
Mouse   266 GDVVSALSKAWCVNCFSCSTCNMKLTLKNKFVEFDMKPVCKRCYERFP 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 16/56 (29%)
LIM 65..116 CDD:259829 18/50 (36%)
LIM 124..171 CDD:413332 14/47 (30%)
Lims2NP_659111.1 LIM1_PINCH 15..73 CDD:188717
LIM2_PINCH 76..127 CDD:188718
LIM3_PINCH 140..190 CDD:188719 15/52 (29%)
LIM4_PINCH 196..249 CDD:188720 18/52 (35%)
LIM5_PINCH 257..310 CDD:188721 16/52 (31%)
Blue background indicates that the domain is not in the aligned region.

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