DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30178 and pin-2

DIOPT Version :10

Sequence 1:NP_726395.1 Gene:CG30178 / 246501 FlyBaseID:FBgn0050178 Length:187 Species:Drosophila melanogaster
Sequence 2:NP_001255672.1 Gene:pin-2 / 178234 WormBaseID:WBGene00004030 Length:330 Species:Caenorhabditis elegans


Alignment Length:238 Identity:47/238 - (19%)
Similarity:85/238 - (35%) Gaps:67/238 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ASICCRCNEKIWPRAVCSLGKTYHPHHFTCKECGLVVDPKLFF---------------------- 45
            |.:|.:|||.:..:.|.|...:||...|||.||.:.::.::.:                      
 Worm    79 APVCAKCNEFVIGQVVHSSNNSYHLACFTCDECNVHLNSQIAYRYQGTILCFLCNQKKPKMRIYN 143

  Fly    46 ----------------------------------------AVDDDVVCSECYLDKHAARCSACR- 69
                                                    .:.||:.|..|: |.....|..|: 
 Worm   144 CNKCKQHVDNSDLLTYQENPYHAYHFKCTTCKKVLESDARTIKDDLFCPRCF-DFKCEVCFDCKK 207

  Fly    70 --TPILERGVAAAERKWHEKCFRCVSCSKSLVSASFFEVNGYLFCKAHFRELFSSRCAGCEKPID 132
              .|.:|:.:....:.||...|||.:|::.......:|.||..:|:..|.||....|..|::.:.
 Worm   208 VIDPQVEQSIFTMNKHWHTDHFRCATCARPFFGHEHYEKNGKAYCRDDFLELIGHHCFICDRNVG 272

  Fly   133 RRAVVALSTKWHAKCFKCHHCRKRISAREFWIE-NGQPICAAC 174
            ...|......:..:|::|..|.|.:..::..:| :..|:|..|
 Worm   273 GGMVHVFGKAFCPECYRCRGCDKVLHYKDKVMELDLMPLCKKC 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30178NP_726395.1 LIM 6..61 CDD:413332 18/116 (16%)
LIM 65..116 CDD:259829 14/53 (26%)
LIM 124..171 CDD:413332 9/47 (19%)
pin-2NP_001255672.1 LIM1_PINCH 21..79 CDD:188717 47/238 (20%)
LIM 82..133 CDD:413332 13/50 (26%)
LIM 144..195 CDD:413332 3/50 (6%)
LIM4_PINCH 200..256 CDD:188720 14/55 (25%)
LIM 264..315 CDD:413332 10/50 (20%)

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