DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30105 and rnaseh2c

DIOPT Version :10

Sequence 1:NP_725699.1 Gene:CG30105 / 246459 FlyBaseID:FBgn0050105 Length:155 Species:Drosophila melanogaster
Sequence 2:XP_002939369.3 Gene:rnaseh2c / 100494763 XenbaseID:XB-GENE-6461969 Length:173 Species:Xenopus tropicalis


Alignment Length:116 Identity:43/116 - (37%)
Similarity:64/116 - (55%) Gaps:4/116 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VHYLPAKIDGDGEANVKNYFNNYTREATEFGTGILTNALRGFPLMGEKLKVPEGYCGLVLQETEK 84
            :|.||.:|..:|.||||.||....:: .|.|..:   :.||..|.|:::.||.||.|:||:|.:|
 Frog    61 MHLLPCQIQREGAANVKGYFAPAVKD-REGGKEV---SFRGRTLKGQEVSVPSGYMGVVLREDQK 121

  Fly    85 PISDTSDRKLRLTGVFQDFTYWNYDKVPSNGDPYRQALPLPDVAQALSQPI 135
            |.|:..||...:...|:.||.||.:..||..|....:|..|.:|.|:..|:
 Frog   122 PCSEEEDRLFTVKSTFRSFTQWNLETPPSADDVLIMSLIWPKIAAAIHAPV 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30105NP_725699.1 RNase_H2-C 21..109 CDD:187752 35/87 (40%)
rnaseh2cXP_002939369.3 RNase_H2-C 62..146 CDD:187752 35/87 (40%)

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