DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rif1 and rif1

DIOPT Version :9

Sequence 1:NP_725497.1 Gene:Rif1 / 246445 FlyBaseID:FBgn0050085 Length:1416 Species:Drosophila melanogaster
Sequence 2:XP_005167632.1 Gene:rif1 / 567001 ZFINID:ZDB-GENE-030131-3406 Length:2392 Species:Danio rerio


Alignment Length:1755 Identity:341/1755 - (19%)
Similarity:577/1755 - (32%) Gaps:640/1755 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 WLGDILPLMFDADRKIQDCAVAALAEAL---------VALDVSVIHSAKCWPQIRSEFVDKYTII 117
            |...::||:..:..|::..|.|||...:         ||..|..:.|:...|:::..|..|    
Zfish   187 WAKLVIPLVVHSANKVRLRAAAALELGMPLLLEKQQEVAAIVEPMMSSVLIPEMQKLFASK---- 247

  Fly   118 IGEMRDAKNSNWHKIWTLLVQIMDEDLLRGCVYINKFLALVELGFRNPDNGVRSEAFLCWRVLIK 182
                   ..:|..|:|.|.|:::.:.|.:|..:||..|.|.||||||....::..||:.|:.||.
Zfish   248 -------NETNMLKLWPLFVRLLGKLLHKGGAFINSLLYLEELGFRNSSPNIKKIAFIAWKSLID 305

  Fly   183 IFAAY-DELTSAKRLRLLLIPLRTSQSRSSHVSGIKLRVWWYLLSCLDHELPKSFDSAVEHFLAF 246
            .||.. |.|.|:|||:||:.||.:.|.|:..:...||.|||||...|...|..:|:......|..
Zfish   306 NFALNPDILCSSKRLKLLMQPLSSIQVRTEALLLTKLEVWWYLAVKLGPNLSANFEQVGVPLLHS 370

  Fly   247 ML-------------------GGGPRNLATGL--------------------AHNYQTARELALP 272
            .|                   .|.|....:|:                    ..:|::.:.|.|.
Zfish   371 TLPSDSPLQSPTTPARTSNPSNGTPNTPKSGIPSCSTPSTTPRMNLNSSMQAPQSYRSIQLLGLE 435

  Fly   273 CLVA-LWGVESSEPLQRLMRELRLETLVQPSPLMSVEVFQQHWKPLLAAAVSGLKLLTENDATEA 336
            .|:. |.|.|.:....|...:|.||.|..|. ..|...|.:|...|::|:..|:..:.::    |
Zfish   436 MLLHWLVGPEVTVTAARENLQLSLEPLTHPL-FTSPSTFSRHASTLISASKEGIITVGKH----A 495

  Fly   337 EQLLLQLLVRNLCLAMFRLAVAPFNVACCSEIEKILQAEDNSGGRV----VRALFNTIAADNLVM 397
            .:.||.|:..||.::: ..|:...|            .::..|..|    ::||.:.:::|.|..
Zfish   496 PEALLNLIWSNLIISV-SAAIEAGN------------KKERQGSEVLTLFLQALQSILSSDALPP 547

  Fly   398 ERVSGSDHLDVLEAYLK----LVLKSKT-EVPAAILQRSIACIFAVDRIEANNQNEFRMLGSFAE 457
            ||.     |.:|||.:|    .||.|.. :|....:......:|.:.....:||     |.||.|
Zfish   548 ERA-----LLLLEATVKGIPQKVLGSAAYQVANMDVLNGTPALFLILLFYKSNQ-----LSSFLE 602

  Fly   458 LLMQANDEEDFE--------GF-------AF-----------------KLQVWRQVSQALS---- 486
                  ||..|.        ||       ||                 |.|:||..|..:|    
Zfish   603 ------DERFFSSLETLVSCGFCGPTSPLAFGEAVLGAVNGSVETVKNKKQLWRMWSMVVSPLTD 661

  Fly   487 ------NYLRNNALEYRVAHNASLLDTWLLWPL----------QT-------------------- 515
                  ...:.:|||    ||.|.:.:.|::|:          ||                    
Zfish   662 TITQTNEVNQGDALE----HNFSAIYSALMFPVIHLLPYSALPQTTQKAMISTWSRLYKAFARCS 722

  Fly   516 ------------------LAAFAGRRASNSFD------------------ASFCDQWRQLVNAGQ 544
                              ::|...|.|..|..                  :.:..|::|.:.:.:
Zfish   723 ALVATAEENTCCEELCVKISASLDREALKSLSMLDAIAHILLIIVESMDFSPYTPQFQQKMKSPR 787

  Fly   545 NAPG--RKK--------------------FLT-----------------------------DLKA 558
            ....  ||:                    |||                             .|.:
Zfish   788 TPMSWVRKRSRALGNLSTFHTLLIQTLEAFLTADHSEESAEPLNGIGSALVSILTSLFTNITLPS 852

  Fly   559 TLTDLLKSKDEPLFAELFDAYVTSLIKFGLC----KEAP--------LYKDVFGLLQTIFEQPSS 611
            .|.::|.|..:|| |.|::       :|..|    |.:|        |..|:.|.|||       
Zfish   853 FLQEVLSSLTKPL-ARLYE-------QFSCCDDPSKLSPELGHKLEKLAADLLGCLQT------- 902

  Fly   612 QKTLEACLNTLRNLVVELRQNELMVVFDSL---------KPTLSSGIQCWN-------------K 654
                          .:.|..:|.:.|...|         |...|...|.||             .
Zfish   903 --------------HLTLHDDEFLTVLSPLLCVLFLHKSKQVCSVVTQFWNATFGNALTLSYPEP 953

  Fly   655 MKC-------------------------EGGFLEEWKRGIQEKFRKLPMKTMANQLKELFKADDL 694
            :||                         .|.::.|..: ::.:...:.:.::..:...|.:|::|
Zfish   954 LKCVLNQAKQKTPLILPGFEVVDVPDDYSGTYMSESSQ-LEPQISGVKVTSVGKRDSLLARAEEL 1017

  Fly   695 ------------------------------------FVIIPSVWSLNPEKLTDRQKE-RFAEKSD 722
                                                ||.||.  .:....||:.||| :..::.|
Zfish  1018 TGKSSVTTSKPVSVKLDFGSPKPLRREALEEEASEDFVFIPP--EMKERVLTEHQKEVKRTKRVD 1080

  Fly   723 IPALYNDMSQSQDSASIKPWT----------PK------------------------------KV 747
            ||||||::..|.|:.....:|          ||                              ||
Zfish  1081 IPALYNNLDASMDTTVFSQYTQSQEESMDTLPKGEKDHPVEAASVQLREVASNEVPTTDVKVQKV 1145

  Fly   748 VIAKSKQGELALTGKD---------DNGEVIDITASEESEKEPV------RVDVVTPIRKKPGRK 797
            ..:..:..:.|...||         ..|..:|::..|:|..|..      ..|||:....||..:
Zfish  1146 TSSDIETPDKATPNKDQTLEMDQSPSTGVSVDVSGLEKSALEGTSPNISSSSDVVSGTPPKPNSR 1210

  Fly   798 SQAQKELEAAARAASLAEEPP-------KRQTRTRAAQKETEQVAQPQPAFEPQLRSPKKLPPSP 855
            .|:...||..|...|.:...|       :|..|..|:|..|..    |...:||::.        
Zfish  1211 RQSFITLEKYAEGKSTSPASPAFTGTLTRRSRRLEASQASTSN----QNDSQPQIKK-------- 1263

  Fly   856 VVQSTAAAVKQAKVAKPTPVVVIAQSEDLFPEVAAEPEPQPEPVK---KPDPVPETTQLTPPDVP 917
                    |...:..|.:.:.:..|:|....||..|......|.:   :.|.||:|         
Zfish  1264 --------VDSQESQKMSSIDMSIQNEHASMEVKDEKSVGANPCEGTDEEDVVPDT--------- 1311

  Fly   918 LEAVPSTQLPGSS----GDPAASAGAVAAGEMSPKKSGTRIYNLSSPPDRKQTNNSSSPTLRPKP 978
                 .||:.|.:    ..|.:.|.|.|.|               :|....|:.|.|..:..|:.
Zfish  1312 -----QTQVSGDTLGIKSSPVSKAHAEAQG---------------TPEKNSQSPNDSLASQEPRR 1356

  Fly   979 TGHLTGRGAQLINMIRNKKLDAASGSPYACMSTSRLVHQVTPARAQDRAEQVSTPTSELNELTGT 1043
            :|.            |..|                      |.|....||::.:.:.|       
Zfish  1357 SGR------------RRSK----------------------PVRPGQDAEEIKSKSQE------- 1380

  Fly  1044 DHTSTPIQAPPSKDLLVFSKRLPSPSASPSVSIL---KRKLRCESLDDVTLDSPALK------RK 1099
                   ||....|..:.:.:.|. .||||.::.   |:|:....::| .|::..:|      ..
Zfish  1381 -------QASQPADSAIINSQKPL-LASPSSTLTGRRKKKVETNKMED-QLNNEEMKGDLSQSDS 1436

  Fly  1100 RVSFHDPPVSVTKEYLRDAEETRSSLKPKRCLLMDKVAQTTEMRQALRRRGRLDSIIEIERFASE 1164
            ::|..|||.:|.....:|..:|  .|.||...:....:|:.|         ||.::.|.|..:..
Zfish  1437 QISAADPPQTVGVHANKDLSQT--ELSPKSSPVTQSNSQSKE---------RLPALCESESMSLG 1490

  Fly  1165 QTARTATTDKSLDKSTGEAPEEDAFTSLKWNDTGNAHNISISEEPVKAMEVESELETAGQDLA-- 1227
            :.......::|.:|.|.             ||:.||   |.:..|.......|:.|:..|.:.  
Zfish  1491 RQETKTQLEESTEKETN-------------NDSQNA---SSAARPKHIQSTTSDSESDSQQIVRK 1539

  Fly  1228 --IMDPEAALDLAVAQLPLESVLQRYFDKSPLKSAGMLAKFLSAQMTANEKLKTNVLET----LS 1286
              ....|..| |.::.:|::..|.:...::|....|...:..:.:...:.|..|:.:.|    ..
Zfish  1540 RRSRRSETKL-LEISGVPIKEDLNQTDSQTPTGVKGRAMRRRTVEGAESSKDSTSAVNTEELSAG 1603

  Fly  1287 ENHSKDFLDHAVRENLSSVVCDRLNPTSVLEYVCAKSKISASCRNGLLAQVPEILKSGPRSDSER 1351
            :..|::...:..|.:..     .|:|.|:      :|:.|.|..:|  |:..:.|:..|.::...
Zfish  1604 KESSQELGRYRTRRSRG-----LLSPESM------ESENSDSREDG--ARPKKRLRKPPSTEVLP 1655

  Fly  1352 LAFVQQLMVQCSPGDDLLLDLIDLLMRTRRERNNSTSTHISKGVVSAVGSPDNVAETAADSSSNL 1416
            :|...:::......||:   ..::||.|.::.                ..|:|::.|:...:..|
Zfish  1656 VASEPKVIEMVPEKDDV---QSEVLMETSKDE----------------ADPENISNTSVSETKEL 1701

  Fly  1417  1416
            Zfish  1702  1701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rif1NP_725497.1 Rif1_N <110..240 CDD:315005 48/130 (37%)
Atrophin-1 705..>1129 CDD:331285 101/502 (20%)
GGN <827..920 CDD:330621 17/95 (18%)
rif1XP_005167632.1 Rif1_N 22..363 CDD:289035 61/186 (33%)
Ehrlichia_rpt 1585..2104 CDD:118064 25/149 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595476
Domainoid 1 1.000 88 1.000 Domainoid score I7931
eggNOG 1 0.900 - - E1_2CNCB
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 130 1.000 Inparanoid score I4626
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007187
OrthoInspector 1 1.000 - - oto41248
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR22928
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1100
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.970

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