DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rif1 and rif1

DIOPT Version :9

Sequence 1:NP_725497.1 Gene:Rif1 / 246445 FlyBaseID:FBgn0050085 Length:1416 Species:Drosophila melanogaster
Sequence 2:XP_004917714.2 Gene:rif1 / 100491835 XenbaseID:XB-GENE-920162 Length:2359 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rif1NP_725497.1 Rif1_N <110..240 CDD:315005
Atrophin-1 705..>1129 CDD:331285
GGN <827..920 CDD:330621
rif1XP_004917714.2 Rif1_N 31..363 CDD:403445
PTZ00108 <1212..1512 CDD:240271
termin_org_DnaJ 1567..>2032 CDD:274808
PTZ00341 <1764..1973 CDD:173534
Rif1_CTD_C-II_like 2197..2244 CDD:341312
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8192
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007187
OrthoInspector 1 1.000 - - oto103985
Panther 1 1.100 - - LDO PTHR22928
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.100

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