DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30082 and tmprss4

DIOPT Version :10

Sequence 1:NP_001188942.1 Gene:CG30082 / 246443 FlyBaseID:FBgn0050082 Length:280 Species:Drosophila melanogaster
Sequence 2:XP_012822151.1 Gene:tmprss4 / 733869 XenbaseID:XB-GENE-940762 Length:785 Species:Xenopus tropicalis


Alignment Length:276 Identity:84/276 - (30%)
Similarity:123/276 - (44%) Gaps:63/276 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 CGTTINLPPTNRIVGGRTADIGSNPWLAYLHKNSSLVCTGTLITKRFVLTAAHCLHSFHLLTVRL 92
            |||.   ....||:||..:||...||...|......:|.|:::..|::|.||||           
 Frog   543 CGTG---HKQERIIGGSNSDILKYPWQVSLQYMGQHICGGSILNSRWILCAAHC----------- 593

  Fly    93 GEYDTSTR-ID--------CTSEFCIPTYEEYSVENAYIHTFFGGRQDSRNDIGLLKLNGTVVYK 148
              :|...| :|        .|..:...|:    |:..::::.:...| ..|||.||:|...:|..
 Frog   594 --FDRGQRQVDRWRVQYGITTLTYLFGTF----VDKIFLNSKYVTDQ-KPNDIALLQLKSDIVAS 651

  Fly   149 LFIRPICLFRDPG---QVPYSSTYEAAGWGKIDLINT-------ATVLQTVNLIRLDQSDCERS- 202
            ..::|:||   ||   .:...:.....|||     :|       |:.||.|.:..:..:.|.:. 
 Frog   652 ASVQPVCL---PGYDNNLVVGAVLYVTGWG-----HTVEGGAALASQLQEVAISLISSTTCNQEY 708

  Fly   203 ----LRTSLSYGQFCAGQWRADTCSGDSGGPLSRKMSNGRITRTVQLGIVSYGHYLCRGP---GV 260
                |.|.|..|:...|   ||||.|||||||   :|.|:.:...|:||||:|.. |..|   ||
 Frog   709 GGQILDTMLCAGKIAGG---ADTCQGDSGGPL---VSLGQSSHWEQVGIVSWGDG-CGRPNRVGV 766

  Fly   261 YTYVPSFTNWILSITR 276
            ||.|.||.|||..:.:
 Frog   767 YTDVQSFLNWIYGVMK 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30082NP_001188942.1 Tryp_SPc 40..274 CDD:238113 80/260 (31%)
tmprss4XP_012822151.1 PHA03247 <32..358 CDD:223021
LDLa 402..434 CDD:238060
SRCR_2 453..545 CDD:470597 1/1 (100%)
Tryp_SPc 551..777 CDD:214473 79/258 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.