DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30060 and mrpl-38

DIOPT Version :9

Sequence 1:NP_725293.1 Gene:CG30060 / 246426 FlyBaseID:FBgn0265272 Length:202 Species:Drosophila melanogaster
Sequence 2:NP_490808.1 Gene:mrpl-38 / 171682 WormBaseID:WBGene00021327 Length:413 Species:Caenorhabditis elegans


Alignment Length:209 Identity:53/209 - (25%)
Similarity:91/209 - (43%) Gaps:31/209 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VEKLVTELKRH-HVIPRLFA----CKPTKVISVLYPCDIDIKPGIMVVINETLKQPIIRFKA--D 68
            ||.|  .:.|| .|...||.    .:..:.:.|.:..||.:..|.::..|.|||:|.|..::  :
 Worm   129 VENL--SIYRHFQVFDHLFGDNIFFENVQNLQVNFENDIVVHSGNVITANSTLKRPEITIESVGN 191

  Fly    69 PEHYHTLMMVDLD---VPPDNNTEWLIWMVGNIP-GCDVAMGQTLVAYDNRRTIHGSNIHRIVFL 129
            ...::||:|::||   :....|.|.:.||:.||| |..::.|..::.|......:|:..||:.|:
 Worm   192 GGGFNTLLMINLDGNALDLGKNGEIVQWMISNIPDGEAISAGSEIIDYLQPLPFYGTGYHRVAFV 256

  Fly   130 AFKQYLELDFDETFVPEGEEKGRGTFNCHNFARKY-ALGNPMAANFYLVEW----------LWRW 183
            .|:....:||.    .:|............|.:|: |...|.|..|:...:          |...
 Worm   257 LFRHEKPVDFQ----IQGNSLDTRIHEISKFYKKHEATITPSAIRFFQTSYDNSVKMALHGLGMT 317

  Fly   184 TPTYLVSEHEFEPS 197
            :|.|   |:|..|:
 Worm   318 SPLY---EYEHRPA 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30060NP_725293.1 PEBP_euk 34..177 CDD:176644 39/149 (26%)
mrpl-38NP_490808.1 PEBP_euk 156..301 CDD:176644 39/148 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1557122at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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