DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30054 and gpa-11

DIOPT Version :10

Sequence 1:NP_001036538.3 Gene:CG30054 / 246420 FlyBaseID:FBgn0050054 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_001254088.1 Gene:gpa-11 / 173759 WormBaseID:WBGene00001673 Length:529 Species:Caenorhabditis elegans


Alignment Length:388 Identity:139/388 - (35%)
Similarity:197/388 - (50%) Gaps:60/388 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHCCSSTE--AMEKRRINEEIDKQLRLEKKRSKRELKLLLLGACESGKSTFIKQMRIIHGSGYSD 63
            ::.|..||  |.:..|.|..|::||..||..||:.||:||||..|.||||..|||:|||.:|:||
 Worm   159 VNVCGGTEMSAADMARKNSLINRQLEKEKIDSKKMLKILLLGGPECGKSTIFKQMKIIHMNGFSD 223

  Fly    64 EDKRGYIKLVFQNIFMAMQSMIKAMDML--------------------KISYGQGE---HSELAD 105
            .|...:..|::.||..:|..:::|.:..                    |:.|...|   :.||||
 Worm   224 LDYVNFRYLIYSNIMQSMDQLLEAAEFFHFPPDDSPSIRRALNHYKSYKVRYSTSEVELNRELAD 288

  Fly   106 LVMSIDYETVTTFEDPYLNAIKTLWHDAGIQECYDRRREYQLTDSTEYFLGDIGRIEQADYLPTN 170
                               ::..|::...|:...:|:.|.:|.||..|||.||.||...:|.||.
 Worm   289 -------------------SLSKLYNAEFIKSVLNRKNELKLLDSAVYFLDDIDRISAHEYKPTE 334

  Fly   171 QDILRAREPTFNITVYPFELDGYVLSMVDVAGQRTERRKWIHFFSNVTSIIFLAALSEYDQFMME 235
            .|:||||.||..||...|......|.||||.|||:|:|||||.|.||..::|:||:|.|:.:..:
 Worm   335 MDVLRARVPTTGITEIEFPFKQASLRMVDVGGQRSEQRKWIHCFDNVNGVLFIAAISGYNLYDED 399

  Fly   236 SEN---------DNRLEESKALFHTIITFEWF-KNASIILFLNKMDVLEEKIMYSHLVDYFPEYD 290
            .||         .|||..|..||..|...:.| |..::||||||:|:.:|||....|...|..|.
 Worm   400 EENRKDDGTPTKTNRLRYSMELFKRIANHQCFSKKTAMILFLNKIDIFKEKIGKYPLTTCFKNYK 464

  Fly   291 GPKQDAY-AAREYVLRMFQSI---SLDTYKKIYSHFTCATDTENIKFVFAAVKDTILQCNLKE 349
            |  .:|: .|.:||...|..:   .:...|.:|:|.|.||||.||..||.:..|.|.:.::::
 Worm   465 G--VNAFEPACKYVTDRFSRLVSGDIQHEKPLYTHITNATDTRNIDRVFDSCMDVIFKISMEK 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30054NP_001036538.3 G-alpha 34..347 CDD:206639 126/349 (36%)
gpa-11NP_001254088.1 G_alpha 173..527 CDD:214595 135/374 (36%)

Return to query results.
Submit another query.