DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmem18 and PS1

DIOPT Version :9

Sequence 1:NP_725169.3 Gene:Tmem18 / 246418 FlyBaseID:FBgn0050051 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_564445.1 Gene:PS1 / 840337 AraportID:AT1G34355 Length:1477 Species:Arabidopsis thaliana


Alignment Length:70 Identity:17/70 - (24%)
Similarity:27/70 - (38%) Gaps:14/70 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 INEFAANNWSSFSRQQ------YFDSNGLFISTVFSIPILLNCMLLIGTWLYNSTQLMVTLKTAQ 127
            :||.:....||.|.::      ..:::.|.:||.|..|..|        ||....|......|:.
plant   467 LNEISERMESSMSNKEDDPFLAAKETSSLPLSTDFINPETL--------WLVEDVQASPEFCTSS 523

  Fly   128 LKERA 132
            :|..|
plant   524 VKANA 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmem18NP_725169.3 TMEM18 15..133 CDD:291436 17/70 (24%)
PS1NP_564445.1 FHA <5..170 CDD:224630
FHA 65..131 CDD:278899
PIN_Smg5-Smg6-like 1239..1407 CDD:189050
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22593
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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